View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654_low_12 (Length: 286)
Name: NF4654_low_12
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 23820222 - 23820487
Alignment:
| Q |
5 |
aatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagacgatattt |
104 |
Q |
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| T |
23820222 |
aatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagaagatattt |
23820321 |
T |
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| Q |
105 |
ataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
204 |
Q |
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| T |
23820322 |
ataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
23820421 |
T |
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| Q |
205 |
tcgtgtaaatgaaagcaacaagaatcgtttgcgtagaagaagtgctggcgatgttacccatgttag |
270 |
Q |
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| T |
23820422 |
tcatgtaaatgaaagcaacaagaatcgtttgcgtagaagaagtgctggtgatgttacccatgttag |
23820487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 23833225 - 23833471
Alignment:
| Q |
5 |
aatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagacgatattt |
104 |
Q |
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| T |
23833225 |
aatttggtggaatgggcaaagccttatctatccaacaagcataagattttgcgcgtgttggatagtcgccttgaaggccaatacgaattagaagatgttt |
23833324 |
T |
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| Q |
105 |
ataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
204 |
Q |
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| T |
23833325 |
ttaaggttgctatactctccctacggtgcctttcagtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
23833424 |
T |
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| Q |
205 |
tcgtgtaaatgaaagcaacaagaatcgtttgcgtagaagaagtgctg |
251 |
Q |
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| T |
23833425 |
tcatgtaaatggatgcaaccagaatcgtttgcgtagaagaagtgctg |
23833471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 23829389 - 23829649
Alignment:
| Q |
5 |
aatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagacgatattt |
104 |
Q |
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| T |
23829389 |
aatttggtggaatgggctaagccttatctaaccaacaagcgtaaaattttgcgcgtgttggatagccgtcttgaaggccaatatgagttagaagatgcct |
23829488 |
T |
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| Q |
105 |
ataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
204 |
Q |
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|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
23829489 |
ataaagttgctacactatccctaaggtgcctttcaatagaagccaagttgagaccaaacatggatgaggttgttacggatttggagaagttgcaggttca |
23829588 |
T |
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| Q |
205 |
tcgtgtaaatgaaagcaacaagaatcgtttgcgtagaagaagtgctggcgatgttacccat |
265 |
Q |
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| T |
23829589 |
agatgtaaatggctgcaatcagaatcgttcgcgtagaagaagtgctgattatgttacccat |
23829649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 23825491 - 23825756
Alignment:
| Q |
5 |
aatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagacgatattt |
104 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||| || ||||| |||||||||||| |||| || | |
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| T |
23825491 |
aatttggtggaatgggctaagccttgtctatccaacaagcgtaagattttgcacgtgtttgataatcgccttgaaggccaatatgaaatagaagacgcct |
23825590 |
T |
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| Q |
105 |
ataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaggttcc |
204 |
Q |
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|||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23825591 |
ataaggttgctatactttccctacggtgcctttcaatagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgcaaattcc |
23825690 |
T |
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| Q |
205 |
tcgtgtaaatgaaagcaacaagaatcgtttgcgtagaagaagtgctggcgatgttacccatgttag |
270 |
Q |
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| T |
23825691 |
tcaagtaaacggatgcaaccataatcatttgcgtagaagaagtgctgatgatgttacccatgttag |
23825756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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