View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654_low_2 (Length: 674)
Name: NF4654_low_2
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 19577091 - 19577591
Alignment:
| Q |
18 |
cagtaagaggaaaatcaaaatcataagcgagatccgcttgtttttcatcttcttgagtaaaaagaacaacaacagaatcattctggtcactgagattatg |
117 |
Q |
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| T |
19577091 |
cagtaagaggaaaatcaaaatcataagcgagatccgcttgtttttcatcttcttgagtaaaaagaacaacaacagaatcattctggtcactgagattatg |
19577190 |
T |
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| Q |
118 |
aagatgaatcggacggtgactatcgataacgaagatagtagcataaggacctaagttaagtattttgcgaagatctttatgagagccccagttgattaaa |
217 |
Q |
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| T |
19577191 |
aagatgaatcggacggtgactatcgataacgaagatagtagcataaggacctaagttaagtattttgcgaagatctttatgagagccccagttgattaaa |
19577290 |
T |
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| Q |
218 |
acaatggaggtgtggttaatgttttggggggtgggtttagcataattatgaatttcgcggaaggatgaaacggggtaagatgcgtattgaattgaatcgg |
317 |
Q |
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| T |
19577291 |
acaatggaggtgtggttaatgttttggggggtgggtttagcataattatgaatttcgcggaaggatgaaacggggtaagatgcgtattgaattgaatcgg |
19577390 |
T |
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| Q |
318 |
attcgagaatacggaaaagggttttgagtgcgcagagggaatcgacgtcggaggttgaggggaaaatgaggacgggggatgtggtggaagaaagttgggc |
417 |
Q |
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| T |
19577391 |
attcgagaatacggaaaagggttttgagtgcgcagagggaatcgacgtcggaggttgaggggaaaatgaggacgggggatgtggtggaagaaagttgggc |
19577490 |
T |
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| Q |
418 |
ggattgacggagtttggtgtagaatgaatcgactctgtgttcacgaaccatagtgtgataattgagtgaagaaaaaaggggttgagaattgaatgaatga |
517 |
Q |
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| T |
19577491 |
ggactgacggagttttgtgtaaaatgaatcgactctgtgttcacgaaccatagtgtgataattgagtgaagaaagaaggggttgagaattgaatgaatga |
19577590 |
T |
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| Q |
518 |
a |
518 |
Q |
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| T |
19577591 |
a |
19577591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 587 - 662
Target Start/End: Original strand, 19577656 - 19577731
Alignment:
| Q |
587 |
gagagttatgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttatgatttt |
662 |
Q |
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| T |
19577656 |
gagagttatgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttgtgatttt |
19577731 |
T |
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