View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654_low_27 (Length: 237)
Name: NF4654_low_27
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 43376298 - 43376507
Alignment:
| Q |
1 |
ttctacgtaatcattcttttttaataatttcaaccattgctgttacaatttcacattcttatcatcacaagtaagaccctccatctccctctctcttatt |
100 |
Q |
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| T |
43376298 |
ttctacgtaatcattcttttttaataatttcaaccattgctgttacaattttacattcttatcatcacaagtaagaccctccatctccctctctcttatt |
43376397 |
T |
|
| Q |
101 |
catgtttgtaacaaaatcattattannnnnnngtttgtgtctttcaattccataataactattgatatttgaatataactgttgtaacaaataatttttt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43376398 |
catgtttgtaacaaaatcattatttattttttgtttgtgtctttcaattccataataactattgatatttgaatataactgttgtaacaaataaattttt |
43376497 |
T |
|
| Q |
201 |
ataggttatt |
210 |
Q |
| |
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|||||||||| |
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| T |
43376498 |
ataggttatt |
43376507 |
T |
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