View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4654_low_29 (Length: 233)

Name: NF4654_low_29
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4654_low_29
NF4654_low_29
[»] chr6 (7 HSPs)
chr6 (156-215)||(13179564-13179623)
chr6 (123-161)||(21226720-21226758)
chr6 (124-159)||(229547-229582)
chr6 (123-157)||(2181571-2181605)
chr6 (123-157)||(19376064-19376098)
chr6 (123-158)||(1309783-1309819)
chr6 (123-155)||(10790358-10790390)
[»] chr5 (6 HSPs)
chr5 (163-215)||(32409661-32409713)
chr5 (160-215)||(32373625-32373680)
chr5 (123-164)||(18254392-18254434)
chr5 (123-155)||(13012649-13012681)
chr5 (123-159)||(24802035-24802071)
chr5 (123-155)||(28519651-28519683)
[»] scaffold0334 (2 HSPs)
scaffold0334 (126-161)||(4066-4101)
scaffold0334 (123-155)||(4325-4357)
[»] chr8 (5 HSPs)
chr8 (123-159)||(39302140-39302176)
chr8 (123-161)||(5422736-5422774)
chr8 (123-155)||(23566150-23566182)
chr8 (123-159)||(43888949-43888985)
chr8 (123-155)||(43889054-43889086)
[»] chr4 (6 HSPs)
chr4 (123-158)||(23981375-23981410)
chr4 (123-157)||(9884953-9884987)
chr4 (123-156)||(12144804-12144837)
chr4 (123-155)||(40997506-40997538)
chr4 (126-158)||(46523253-46523285)
chr4 (123-155)||(48613061-48613093)
[»] chr3 (7 HSPs)
chr3 (126-161)||(1421425-1421460)
chr3 (123-157)||(51102335-51102369)
chr3 (123-156)||(12013510-12013543)
chr3 (126-159)||(30908581-30908614)
chr3 (123-156)||(35359666-35359699)
chr3 (123-159)||(2680038-2680074)
chr3 (123-155)||(13468368-13468400)
[»] chr1 (3 HSPs)
chr1 (123-162)||(15710819-15710858)
chr1 (123-156)||(25170955-25170988)
chr1 (123-167)||(20158991-20159035)
[»] chr7 (2 HSPs)
chr7 (123-161)||(35097788-35097826)
chr7 (123-156)||(18656302-18656335)
[»] chr2 (1 HSPs)
chr2 (123-156)||(43015225-43015258)
[»] scaffold0002 (1 HSPs)
scaffold0002 (123-159)||(342661-342697)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 13179564 - 13179623
Alignment:
Q  156 ttaattataagtgttcacgtgaaattgatgtagctcactaaaaatgacatcgttgcagat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13179564 ttaattataagtgttcacgtgaaattgatgtagctcactaaaaatgacattgttgcagat 13179623  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 21226758 - 21226720
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaatt 161  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  21226758 acctatattacaggggtaaagcaccattaacccttaatt 21226720  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 229582 - 229547
Alignment:
Q  124 cctatattacaggggtaaatcaccattaacccttaa 159  Q
    ||||||||||||||||||| ||||||||||||||||    
T  229582 cctatattacaggggtaaagcaccattaacccttaa 229547  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 2181571 - 2181605
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccctt 157  Q
    |||||||||||||||||||| ||||||||||||||    
T  2181571 acctatattacaggggtaaagcaccattaaccctt 2181605  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 19376098 - 19376064
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccctt 157  Q
    |||||||||||||||||||| ||||||||||||||    
T  19376098 acctatattacaggggtaaagcaccattaaccctt 19376064  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 1309819 - 1309783
Alignment:
Q  123 acctatattacagggg-taaatcaccattaaccctta 158  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1309819 acctatattacagggggtaaatcaccattaaccctta 1309783  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 10790358 - 10790390
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  10790358 acctatattacaggggtaaagcaccattaaccc 10790390  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 32409713 - 32409661
Alignment:
Q  163 taagtgttcacgtgaaattgatgtagctcactaaaaatgacatcgttgcagat 215  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32409713 taagtgtttacgtgaaattgatgtagctcactaaaaatgacatcgttgcagat 32409661  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 32373680 - 32373625
Alignment:
Q  160 ttataagtgttcacgtgaaattgatgtagctcactaaaaatgacatcgttgcagat 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  32373680 ttataagtgtttacgtgaaattgatgtagctcactaaaaatgacattgttgcagat 32373625  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 18254392 - 18254434
Alignment:
Q  123 acctatattacagggg-taaatcaccattaacccttaattata 164  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  18254392 acctatattacagggggtaaatcaccattaacccttatttata 18254434  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 13012649 - 13012681
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  13012649 acctatattacaggggtaaagcaccattaaccc 13012681  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 24802035 - 24802071
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaa 159  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  24802035 acctatattacaggggtaaaacactattaacccttaa 24802071  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 28519651 - 28519683
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  28519651 acctatattacaggggtaaagcaccattaaccc 28519683  T

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Target: scaffold0334 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 4101 - 4066
Alignment:
Q  126 tatattacaggggtaaatcaccattaacccttaatt 161  Q
    ||||||||||||||||||||||||||||||||||||    
T  4101 tatattacaggggtaaatcaccattaacccttaatt 4066  T

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Target: scaffold0334; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 4325 - 4357
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  4325 acctatattacaggggtaaagcaccattaaccc 4357  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 39302140 - 39302176
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaa 159  Q
    |||||||||||||||||||| ||||||||||||||||    
T  39302140 acctatattacaggggtaaaacaccattaacccttaa 39302176  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 5422774 - 5422736
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaatt 161  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  5422774 acctatattacaggggtaaatcactattaaccctaaatt 5422736  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 23566150 - 23566182
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  23566150 acctatattacaggggtaaagcaccattaaccc 23566182  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 43888985 - 43888949
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaa 159  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  43888985 acctatattacaggagtaaagcaccattaacccttaa 43888949  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 43889054 - 43889086
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  43889054 acctatattacaggggtaaagcaccattaaccc 43889086  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 23981375 - 23981410
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccctta 158  Q
    |||||||||||||||||||| |||||||||||||||    
T  23981375 acctatattacaggggtaaagcaccattaaccctta 23981410  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 9884987 - 9884953
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccctt 157  Q
    |||||||||||||||||||| ||||||||||||||    
T  9884987 acctatattacaggggtaaaacaccattaaccctt 9884953  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 12144804 - 12144837
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    |||||||||||||||||||| |||||||||||||    
T  12144804 acctatattacaggggtaaagcaccattaaccct 12144837  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 40997538 - 40997506
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    ||||||||||| |||||||||||||||||||||    
T  40997538 acctatattactggggtaaatcaccattaaccc 40997506  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 46523253 - 46523285
Alignment:
Q  126 tatattacaggggtaaatcaccattaaccctta 158  Q
    ||||||||||||||||| |||||||||||||||    
T  46523253 tatattacaggggtaaaacaccattaaccctta 46523285  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 48613093 - 48613061
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  48613093 acctatattacaggggtaaagcaccattaaccc 48613061  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 1421460 - 1421425
Alignment:
Q  126 tatattacaggggtaaatcaccattaacccttaatt 161  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1421460 tatattacaggggtaaagcaccattaacccttaatt 1421425  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 51102335 - 51102369
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccctt 157  Q
    |||||||||||||||||||| ||||||||||||||    
T  51102335 acctatattacaggggtaaagcaccattaaccctt 51102369  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 12013543 - 12013510
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    ||||||||||||||||||||||||| ||||||||    
T  12013543 acctatattacaggggtaaatcacccttaaccct 12013510  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 30908614 - 30908581
Alignment:
Q  126 tatattacaggggtaaatcaccattaacccttaa 159  Q
    ||||||||||||||||| ||||||||||||||||    
T  30908614 tatattacaggggtaaagcaccattaacccttaa 30908581  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 35359666 - 35359699
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    |||||||||||||||||||| |||||||||||||    
T  35359666 acctatattacaggggtaaaacaccattaaccct 35359699  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 2680074 - 2680038
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaa 159  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  2680074 acctatattacagggggaaagcaccattaacccttaa 2680038  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 13468368 - 13468400
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  13468368 acctatattacaggggtaaaacaccattaaccc 13468400  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 15710819 - 15710858
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaatta 162  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  15710819 acctatattacaagggtaaagcaccattaacccttaatta 15710858  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 25170988 - 25170955
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    |||||||||||||||||||| |||||||||||||    
T  25170988 acctatattacaggggtaaaacaccattaaccct 25170955  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 20158991 - 20159035
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaattataagt 167  Q
    |||||||||||||||||||| ||| |||||||||| ||| |||||    
T  20158991 acctatattacaggggtaaaacactattaaccctttattttaagt 20159035  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 35097788 - 35097826
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaatt 161  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  35097788 acctatattacaggggtaaaacaccattaaccctaaatt 35097826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 18656302 - 18656335
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    ||||||||||||||| ||||||||||||||||||    
T  18656302 acctatattacagggataaatcaccattaaccct 18656335  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 43015225 - 43015258
Alignment:
Q  123 acctatattacaggggtaaatcaccattaaccct 156  Q
    |||||||||||||||||||| |||||||||||||    
T  43015225 acctatattacaggggtaaagcaccattaaccct 43015258  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 342661 - 342697
Alignment:
Q  123 acctatattacaggggtaaatcaccattaacccttaa 159  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  342661 acctatattagaggggtaaagcaccattaacccttaa 342697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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