View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654_low_3 (Length: 548)
Name: NF4654_low_3
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 43051700 - 43051176
Alignment:
| Q |
18 |
ctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatcta |
117 |
Q |
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| T |
43051700 |
ctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatcta |
43051601 |
T |
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| Q |
118 |
atcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatatacctgagggaaggaagagctctgagcccaaacagagcca |
217 |
Q |
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| T |
43051600 |
atcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatatacctgagggaaggaagagctctgagcccaaacagagcca |
43051501 |
T |
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| Q |
218 |
tcatggccaatgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtcct |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051500 |
tcatggccaatgatggcagcggcagataggtggtgtccggtgccatcaatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtcct |
43051401 |
T |
|
| Q |
318 |
tcaaaatttgttccttttttcttcttgttgtttagtgttgttgtaatgtaatg-----tgattgtgaccttcaaatattgtttttaaataagggttggaa |
412 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051400 |
tcaaaatttgttccttttttcttcttgttgtgtagtgttgttgtaatgtaatgtaatatgattgtgaccttcaaatattgtttttaaataagggttggaa |
43051301 |
T |
|
| Q |
413 |
tggaattggatgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttctccttcattttaggactcaactaactact |
512 |
Q |
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| T |
43051300 |
tggaattggatgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttctccttcattttaggactcaactaactact |
43051201 |
T |
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| Q |
513 |
ctctctatttactattcctattctt |
537 |
Q |
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| T |
43051200 |
ctctctatttactattcctattctt |
43051176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 34173838 - 34173974
Alignment:
| Q |
178 |
tacctgagggaaggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatc |
277 |
Q |
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|||||||||||| |||| |||||||||||||||||| || |||||||| | |||||||| || | |||||||| || |||||||| |||||||||||| |
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| T |
34173838 |
tacctgagggaatgaagtgctctgagcccaaacagaaccgtcatggccgagaatggcagccgcggtgaggtgatgaccagtgccatcgatatcacacatc |
34173937 |
T |
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| Q |
278 |
aaatgttcatcaacgtaagtttgccacgacattttgt |
314 |
Q |
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| T |
34173938 |
aaatgttcatccacataagtttgccacgacattttgt |
34173974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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