View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654_low_4 (Length: 539)
Name: NF4654_low_4
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 132 - 393
Target Start/End: Complemental strand, 35532400 - 35532139
Alignment:
| Q |
132 |
tccttcttgcagtaagaacggaaaaacttacaaagttaatccaacatatcagagaagtctccagaaacttttagtacatgggtgagtagtacatcacttt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35532400 |
tccttcttgcagtaagaacggaaaaacttacaaagttaatccaacatatcagagaagtctccagaaacttttagtacatgggtgagtagtacatcacttt |
35532301 |
T |
|
| Q |
232 |
atcttctttttcttttcatggtaatagttatcccatcatgttcccttgttgctattaaggtacataaaattgttaatatgagtatttcgataaaaccctt |
331 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35532300 |
atcttctttttcttttcacggtaatagttatcccatcatgttcccttgttgctattaaggtacataaaattgttaatatgagtatttcgataaaaccctt |
35532201 |
T |
|
| Q |
332 |
ccatatcacgtattatgagttaacaaaccaatatagtcgatgggtggttactccatgaaatt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35532200 |
ccatatcacgtattatgagttaacaaaccaatatagtcgatgggtggttactccatgaaatt |
35532139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35532488 - 35532399
Alignment:
| Q |
1 |
ttccttttgattatgtatattattctccagacctttgtgtgtcttttttcaagctttgaaagatcatagtaccgaaacatcgccattatc |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35532488 |
ttccttttgattatgtatattattctccagacctttgtgtgtctttgttcaagctttgaaagatcatagtactgaaacatcgccattatc |
35532399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 32703964 - 32704355
Alignment:
| Q |
1 |
ttccttttgattatgtatattattctccagacctttgtgtgtcttttttcaagctttgaaagatcatagtaccgaaacatcgccattatcactttcgacc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| | | ||||| |||||| |||| |||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
32703964 |
ttcctttttattatgtatattattctcaacatctttgcgtgtctgtttt-aagctttgaaagatcatagtactgaaacatcaccattttcactttcgacc |
32704062 |
T |
|
| Q |
101 |
cttgttttatcccagtttagtannnnnnnnctccttcttgcagtaagaacggaaaaacttacaaagttaatccaacatatcagagaagtctccagaaact |
200 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| ||||||| |||||||||| |||||||| |||||||||||| |||||||||||| || |
|
|
| T |
32704063 |
cttgttttatcccagtttagtattttttttcaccttcttgcaggaagaacgaaaaaacttaccaagttaattcaacatatcagaaaagtctccagaatct |
32704162 |
T |
|
| Q |
201 |
tttagtacatgggtgagtagtacatcactttatcttctttttcttttcatggtaatagttatcccatcatgttcccttgttgctattaaggtacataaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
32704163 |
tttagtacatgggtgagtagtacatcactttgtcttctttttctattcatggtaatagttatcccatcttactcccttgttgctattaaggtacataaaa |
32704262 |
T |
|
| Q |
301 |
ttgttaatatgagtatttcgataaaacccttccatatcacgtattatgagttaacaaaccaatatagtcgatgggtggttactccatgaaatt |
393 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
32704263 |
ttgttaatatgagtggttcgataaaacccttccatatcacgtattatgagttaacaaacctatatagacgatgggtggttactccttgaaatt |
32704355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Complemental strand, 15002953 - 15002919
Alignment:
| Q |
486 |
aaaaattgaattaaatatgtcaaattaaaaatatt |
520 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15002953 |
aaaaattgaatcaaatatgtcaaattaaaaatatt |
15002919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 27357888 - 27357846
Alignment:
| Q |
485 |
taaaaattgaattaaatatgtcaaattaaaaatatttcatctc |
527 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
27357888 |
taaaaattgaatcaaacatgtcaaattaaaaatatttcctctc |
27357846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 527
Target Start/End: Complemental strand, 40021367 - 40021260
Alignment:
| Q |
421 |
tcatcatataatatcaaattgcagtgaaaataagtctcagcaacataaa-tcatttgtcatatcttaaaaattgaattaaatatgtcaaattaaaaatat |
519 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
40021367 |
tcatcatataatatcaaattgtagtgaaaataagtctgagcaacataaagtcatttgtcatatcttaaaaattgaactaaacatgtcaaattaaaaatat |
40021268 |
T |
|
| Q |
520 |
ttcatctc |
527 |
Q |
| |
|
|| ||||| |
|
|
| T |
40021267 |
tttatctc |
40021260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 22401802 - 22401760
Alignment:
| Q |
485 |
taaaaattgaattaaatatgtcaaattaaaaatatttcatctc |
527 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
22401802 |
taaaaattgaatcaaacatgtcaaattaaaaatatttcctctc |
22401760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Complemental strand, 32541083 - 32541042
Alignment:
| Q |
484 |
ttaaaaattgaattaaatatgtcaaattaaaaatatttcatc |
525 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
32541083 |
ttaaaaattgaaccaaacatgtcaaattaaaaatatttcatc |
32541042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University