View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4654_low_5 (Length: 534)

Name: NF4654_low_5
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4654_low_5
NF4654_low_5
[»] chr7 (5 HSPs)
chr7 (178-289)||(43505851-43505962)
chr7 (11-150)||(43505650-43505792)
chr7 (182-286)||(39071531-39071636)
chr7 (87-180)||(39071409-39071502)
chr7 (11-71)||(39071359-39071420)
[»] chr3 (1 HSPs)
chr3 (11-69)||(348090-348149)
[»] scaffold0047 (1 HSPs)
scaffold0047 (208-269)||(49618-49678)
[»] chr8 (1 HSPs)
chr8 (175-224)||(42124394-42124443)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 43505851 - 43505962
Alignment:
Q  178 aatggagagttaattcataacctatatgggaaatgaaaatgaaaaacggaatgtaaaacaagcatgtattagagcaagtgtcaatcttagagtgaaagtc 277  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  43505851 aatggagagttaattcgtaacctatatgggaaatgaaaatgaaaaatggaatgtaaaacaagcatgtattagagcaagcgtcaatcttagagtgtaagtc 43505950  T
Q  278 aaaagaattggg 289  Q
    |||| |||||||    
T  43505951 aaaaaaattggg 43505962  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 43505650 - 43505792
Alignment:
Q  11 aatgaaatggcctataaagcactcttagttttttatatgcaaataaaaa-gattagaatatcttgacnnnnnnnnnn--gattagaatatcaagaaataa 107  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||            ||||||||||||||||| |||    
T  43505650 aatgaaatggcctgtatagcactcttagttttttatatgcaaataaaaatgattagaatatcttgacaaaaataaaaaagattagaatatcaagaagtaa 43505749  T
Q  108 aaaatgtaaccgatcatcccaaacataaaatataactgatgga 150  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  43505750 aaaatgtaaccgatcatcccaaacataaaatataaccgatgga 43505792  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 39071531 - 39071636
Alignment:
Q  182 gagagttaattcataacctatatgggaaatgaaaatgaaaaac-ggaatgtaaaacaagcatgtattagagcaagtgtcaatcttagagtgaaagtcaaa 280  Q
    |||||||||||| |||||||||||| ||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39071531 gagagttaattcgtaacctatatggtaaatgaaaatgaaaaaatggaatgtaaaagaagcatggattagagcaagtgtcaatcttagagtgaaagtcaaa 39071630  T
Q  281 agaatt 286  Q
    | ||||    
T  39071631 aaaatt 39071636  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 39071409 - 39071502
Alignment:
Q  87 gattagaatatcaagaaataaaaaatgtaaccgatcatcccaaacataaaatataactgatggannnnnnnnaataggcccatgatgtattaat 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||        ||||||||||||||||||||||    
T  39071409 gattagaatatcaagaagtaaaaaatgtaaccgatcatcccaaacataaaatatgaccgatggattttttttaataggcccatgatgtattaat 39071502  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 39071359 - 39071420
Alignment:
Q  11 aatgaaatggcctataaagcactcttagttttttatatgcaaataaaaa-gattagaatatc 71  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  39071359 aatgaaatggcctgtatagcactcttagttttttatatgcaaataaaaatgattagaatatc 39071420  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 348149 - 348090
Alignment:
Q  11 aatgaaatggcctataaagcactcttagttttttatatgcaaataaaaa-gattagaata 69  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  348149 aatgaaatggcctatatagcactcttagttttatatatgcaaataaaaatgattagaata 348090  T

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Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 49678 - 49618
Alignment:
Q  208 aaatgaaaatgaaaaacggaatgtaaaacaagcatgtattagagcaagtgtcaatcttagag 269  Q
    |||||||||||||||| || ||| |||| || ||||||||||||||||||||||||||||||    
T  49678 aaatgaaaatgaaaaatggcatgcaaaaaaa-catgtattagagcaagtgtcaatcttagag 49618  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 42124443 - 42124394
Alignment:
Q  175 attaatggagagttaattcataacctatatgggaaatgaaaatgaaaaac 224  Q
    ||||||||||||||  ||| |||| |||||||| ||||||||||||||||    
T  42124443 attaatggagagttgtttcgtaacttatatgggtaatgaaaatgaaaaac 42124394  T

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