View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4654_low_6 (Length: 442)
Name: NF4654_low_6
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 38845587 - 38845997
Alignment:
| Q |
19 |
agaagcaatgtggacaatcaaatcaataacacgggtactgcaacaacaaaaaacaacgtattatgagtacgaagaacactatgtatattttggacaatca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38845587 |
agaagcaatgtggacaatcaaatcaataacacgggtactgcaacaccaaaaaacaacgtattatgagtacgaagaacactacgtatattttggacaatca |
38845686 |
T |
|
| Q |
119 |
attcaatgccatattgtgacagcaaggtcttagagtagtttacctgtaaccccattcgttgtcataccaagaaacaagtttcacaaagttgtcattcaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38845687 |
attcaatgccatattgtgacagcaaggtcttagagtagtttacctgtaaccccattcgttgtcataccaagaaacaagtttcacaaagttgtcattcaaa |
38845786 |
T |
|
| Q |
219 |
gcaattccagccttggcatcaaagatgctagacctgtaaatgaaattaaagtccaacacaataataattagattgagagaacaccaaaaactgatcatga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38845787 |
gcaattccagccttggcatcaaagatgctagacctgtaaatgaaaataaagtccaacacaataataattagattgagagaacaccaaaaactgatcatga |
38845886 |
T |
|
| Q |
319 |
tagtttatcttcaaagttgcttaaaaaaccaacattacctgctatcaccaataaagtcagtggataccacatcatcttcagtgtaacccaaaataccctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38845887 |
tagtttatcttcaaagttgcttaaaaaaccaacattacctgctatcaccaataaagtcagtggataccacatcatcttcagtgtaacccaaaataccctt |
38845986 |
T |
|
| Q |
419 |
cagcttgccct |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
38845987 |
cagcttgccct |
38845997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 38834662 - 38834710
Alignment:
| Q |
21 |
aagcaatgtggacaatcaaatcaataacacgggtactgcaacaacaaaa |
69 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38834662 |
aagcaatctggacaatcaaatcaataacacgggtactgcaaaaacaaaa |
38834710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 7899897 - 7899992
Alignment:
| Q |
159 |
tacctgtaaccccattcgttgtcataccaagaaacaagtttcacaaagttgtcattcaaagcaattccagccttggcatcaaagatgctagacctg |
254 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||| |||||||| |||||||||||| |
|
|
| T |
7899897 |
tacctgtagccccattcattgtcataccaagagacaagtttcacaaaattgttattcaaagaaattcctgcctttgcatcaaatatgctagacctg |
7899992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 42990457 - 42990553
Alignment:
| Q |
158 |
ttacctgtaaccccattcgttgtcataccaagaaacaagtttcacaaagttgtcattcaaagcaattccagccttggcatcaaagatgctagacctg |
254 |
Q |
| |
|
||||||||||||| | || |||||||||||||| ||||| || || || ||||| || || |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
42990457 |
ttacctgtaacccaactcattgtcataccaagagacaagcttgacgaaattgtcgtttaaggcaattcctgccttggcatcaaagatgctcgacctg |
42990553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 18660408 - 18660333
Alignment:
| Q |
179 |
gtcataccaagaaacaagtttcacaaagttgtcattcaaagcaattccagccttggcatcaaagatgctagacctg |
254 |
Q |
| |
|
|||||||||||| ||||| || |||| ||||| ||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
18660408 |
gtcataccaagagacaagcttatcaaaattgtcgttcaaggcaattcctgccttggcatcaaagatgcttgacctg |
18660333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 22977422 - 22977347
Alignment:
| Q |
179 |
gtcataccaagaaacaagtttcacaaagttgtcattcaaagcaattccagccttggcatcaaagatgctagacctg |
254 |
Q |
| |
|
|||||||||||| ||||| || |||| ||||| ||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
22977422 |
gtcataccaagagacaagcttatcaaaattgtcgttcaaggcaattcctgccttggcatcaaagatgcttgacctg |
22977347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 18660212 - 18660159
Alignment:
| Q |
353 |
ttacctgctatcaccaataaagtcagtggataccacatcatcttcagtgtaacc |
406 |
Q |
| |
|
||||||| ||||||| |||||||||||||| || |||||||| || |||||||| |
|
|
| T |
18660212 |
ttacctggtatcaccgataaagtcagtggagacaacatcatcctcggtgtaacc |
18660159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University