View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4654_low_9 (Length: 322)
Name: NF4654_low_9
Description: NF4654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4654_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 315
Target Start/End: Original strand, 16836404 - 16836710
Alignment:
| Q |
9 |
agcaaaggatgtgtcacgaaagtaagctggggtccattgttgccgagcattatacactgcttcaagccaatcatttccttcaagaccatatttatgtaga |
108 |
Q |
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| T |
16836404 |
agcaaagaatgtgtcacgaaagtaagctggggcccattgttgccgagcattatacactgcttcaagccaatcatttccttcaagaccatatttatgtaga |
16836503 |
T |
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| Q |
109 |
agagacttgcatgttgactcaaaatcctcaattgtctttgaggaattaatgcaactattaaactttccatacagtgaaggatatgcatggtaaatatgag |
208 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16836504 |
agagacttgcatgttgactcaaaatcctcaactgtctttgaggaattaatgcaactattaaactttccatacaatgaaggatatgcatggtaaatatgag |
16836603 |
T |
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| Q |
209 |
ccagtctttcttgactttctcgcaaaatgtgccatttacagatacagtggcgagtttctggaaacacttgcgcaacagcagcctttatgactccatcttg |
308 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16836604 |
ccaatctttcttgactttctcgcaaaatgtgccatttacagatacagtggcgagtttctggaaacacttgcgcaacagcagcctttatgactccatcttg |
16836703 |
T |
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| Q |
309 |
gtctgtg |
315 |
Q |
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||||||| |
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| T |
16836704 |
gtctgtg |
16836710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 14646213 - 14646078
Alignment:
| Q |
9 |
agcaaaggatgtgtcacgaaagtaagctggggtcc-attgttgccgagcattatacactgcttcaagccaatcatttccttcaagaccatatttatgtag |
107 |
Q |
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||||||| ||||||||||||||||||| |||| || |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |
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| T |
14646213 |
agcaaagaatgtgtcacgaaagtaagcaggggccccattgtttgcgagcattatacactgcatcaagtcaatcatttccttcaagaccatatttatctat |
14646114 |
T |
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| Q |
108 |
aagagacttgcatgttgactcaaaatcctcaattgtcttt |
147 |
Q |
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||||||| | ||||| ||||||||||||| ||||||| |
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| T |
14646113 |
aagagacgtccatgt----tcaaaatcctcaactgtcttt |
14646078 |
T |
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