View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4655-Insertion-1 (Length: 900)
Name: NF4655-Insertion-1
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 51 - 385
Target Start/End: Complemental strand, 28739163 - 28738822
Alignment:
| Q |
51 |
gtgttttggttgcaacaatgggagtagtgtgtcctttagttgaaaacaatttcctgaaactatgatttttagt-----ggattctttgcaactctatgtt |
145 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28739163 |
gtgttttggttgcaataatgggagtagtgtgtcctttagttgaaaacaatttcctgaaactatgatttttagtttagtggattctttgcaactctgtgtt |
28739064 |
T |
|
| Q |
146 |
ctttctcttacagatctttttctttagcaaagttttgcaaaatttcggccaaacttttgacatcagcaatttgagagcgttttggtgttacactcagcac |
245 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28739063 |
ctctctcttacaaatctttttctttagcaaagttttgcaaaatttcggccaaacttttgacatgagcaatttgagagcgttttggtgttacactcagcac |
28738964 |
T |
|
| Q |
246 |
aattatttcttttatttcatctacagattgttttgtgctat--taacaactatctaccgattatttcatcatttgtcacatcactaatgcatttgtaacc |
343 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28738963 |
aattatttcttttatttcatctacaggttgttttgtgctattataacaactatctaccgattatttcatcatttgtcacattactaatgcatttgtaacc |
28738864 |
T |
|
| Q |
344 |
attggaattctcttttcccttgctcactacaaacaccattac |
385 |
Q |
| |
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| T |
28738863 |
attggaattctcttttcccttgctcactgcaaacaccattac |
28738822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 28718887 - 28718511
Alignment:
| Q |
10 |
agattcctttccattcgagggcattatgttgtaacctaagggtgttttggttgcaacaatgggagtagtgtgtcctttagttgaaaacaatttcctgaaa |
109 |
Q |
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|||||||||||| | |||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | | ||||||||||| |||||||||||| | |
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| T |
28718887 |
agattcctttccttctgaggatattatgttgtaacctaagggtgttttggttgaaacaacgggagtagtttatactttagttgaatacaatttcctgaca |
28718788 |
T |
|
| Q |
110 |
ctatgatttttagtggattctttgcaac-tctatgttctttctcttacagatctttttctttagcaaagttttgcaaaatttcggccaaacttttgacat |
208 |
Q |
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| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
28718787 |
ttgtgatttttagtagattctttgcaacctctatgttctttctcttacgaatctttttctttagcaaatttttgcaaaatttcgtacaaacttttgacat |
28718688 |
T |
|
| Q |
209 |
cagcaatttgagagcgttttggtgttacactcagcacaattatttcttttatttcatctacagattgttttgtgctattaacaactatctaccgattatt |
308 |
Q |
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||||| |||| || |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28718687 |
cagcattttgtgaacgttttggtgttacgctcggcacaattatttcgtttatttcatctacagattgttttgtgctattaacaactgtctaccgattatt |
28718588 |
T |
|
| Q |
309 |
tcatcatttgtcacatcactaatgcatttgtaaccattggaattctcttttcccttgctcactacaaacaccattac |
385 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
28718587 |
tcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattac |
28718511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 379 - 608
Target Start/End: Complemental strand, 28742548 - 28742319
Alignment:
| Q |
379 |
ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt |
478 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
28742548 |
ccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaagaccatattggt |
28742449 |
T |
|
| Q |
479 |
ggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctctct |
578 |
Q |
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| T |
28742448 |
ggccttcaagttcttcacaagggaaagtggattgatgtaccaccaatacctgaggctcttgttattaatattggtgatgttctgcaggcaagttctctat |
28742349 |
T |
|
| Q |
579 |
tactatattgctatgtgtatttcctgcaac |
608 |
Q |
| |
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|||||| |||| |||| ||||||||||||| |
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| T |
28742348 |
tactattttgcaatgtctatttcctgcaac |
28742319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 380 - 576
Target Start/End: Complemental strand, 28735465 - 28735269
Alignment:
| Q |
380 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg |
479 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||| ||| | |||||| ||||||||| |||||| |
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| T |
28735465 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtg |
28735366 |
T |
|
| Q |
480 |
gccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct |
576 |
Q |
| |
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| |||||||||||| || | ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
28735365 |
gtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagttctct |
28735269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 380 - 576
Target Start/End: Complemental strand, 28700464 - 28700265
Alignment:
| Q |
380 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagacc--att-ttg |
476 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||| ||| | |||||| ||||||| ||| ||| |
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| T |
28700464 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatgttagttttctcacagtgcttctccaagaccgtattattg |
28700365 |
T |
|
| Q |
477 |
gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct |
576 |
Q |
| |
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|||||||||||||||||||| | || |||||||| ||||||||||| |||| |||||||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
28700364 |
gtggccttcaagttcttcaccaagacaagtggatcgatgtaccaccggtacccggggctcttgttgttaatatcggtgatcttctgcaggcaagttctct |
28700265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 380 - 574
Target Start/End: Complemental strand, 28783534 - 28783337
Alignment:
| Q |
380 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagac---cattttg |
476 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||||||| | ||||||||||||||| |||| ||| | |||||||||||| ||| ||| |
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| T |
28783534 |
cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattg |
28783435 |
T |
|
| Q |
477 |
gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttct |
574 |
Q |
| |
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||||||| |||||| ||||| || | |||||||||||| |||| ||||||||| | ||||||| ||||||| |||||||| |||| |||||||||||| |
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| T |
28783434 |
gtggcctccaagtttttcaccagaacaagtggattgatatacctccaatacctgatgctcttgttgttaatgttggtgatcttctacaggcaagttct |
28783337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 457 - 568
Target Start/End: Complemental strand, 16414607 - 16414496
Alignment:
| Q |
457 |
gcttcttcaagaccattttggtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgat |
556 |
Q |
| |
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|||||| ||||| ||| | |||||||||||| |||||||| ||| | ||||||||||||||| || || ||| ||||||| ||||||||||| ||| |
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| T |
16414607 |
gcttctacaagatcatgtaggtggccttcaatatcttcacagggacatgtggattgatgtacctcctatgcctgaggctctaatcgttaatattggcgat |
16414508 |
T |
|
| Q |
557 |
gttctgcaggca |
568 |
Q |
| |
|
||||||||||| |
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|
| T |
16414507 |
tttctgcaggca |
16414496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 514
Target Start/End: Original strand, 10768505 - 10768639
Alignment:
| Q |
380 |
cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg |
479 |
Q |
| |
|
||||| |||||| |||||||||||| ||| || || ||||||| |||| |||||||||| | ||||||| | |||||| ||||||||| |||||| |
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|
| T |
10768505 |
cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtg |
10768604 |
T |
|
| Q |
480 |
gccttcaagttcttcacaaggaaaagtggattgat |
514 |
Q |
| |
|
|||| ||||||||| | |||| || ||||||||| |
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|
| T |
10768605 |
gcctccaagttctttatcaggataaatggattgat |
10768639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 36467676 - 36467601
Alignment:
| Q |
309 |
tcatcatttgtcacatcactaatgcatttgtaaccattggaattctcttttcccttgctcactacaaacaccattac |
385 |
Q |
| |
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||||||| |||||||||| | |||||||||||||||| | |||| |||||||||||||| | ||||||||||||| |
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| T |
36467676 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattac |
36467601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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