View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655-Insertion-2 (Length: 554)
Name: NF4655-Insertion-2
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 41571839 - 41572057
Alignment:
| Q |
7 |
aaataactcgtattgaatgttttgaacaacttaaaaagcaaaacacattttttgcggttgttgtatttgtcaacattgtgtggttgttaagaagttgtga |
106 |
Q |
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| T |
41571839 |
aaataactcgtattgaatgttttgaacaacttaaaaagcaaaacacattttttgcggttgttgtatttgtcaacattgtgtggttgttaagaagttgtga |
41571938 |
T |
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| Q |
107 |
agtatatgttgcaataataacaaggagatactcacgttacatgatatttattgttggaatagtggaaaaatactttcaaaaggagatactaacctaatag |
206 |
Q |
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| T |
41571939 |
agtatatgttgcaataataacaaggagatacccacgttacatgatatttattgttggaatagtggaaaaatactttcaaaaggagatactaacctaatag |
41572038 |
T |
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| Q |
207 |
atttattttcaccactcaa |
225 |
Q |
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| T |
41572039 |
atttattttcaccactcaa |
41572057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 420 - 554
Target Start/End: Original strand, 41572284 - 41572418
Alignment:
| Q |
420 |
ggtgtcaaccattgcatccttttcctttctatcttaatgtgcttctgtattcttttatccttacaatattaaaattatatgtgtatatatcttgcttcca |
519 |
Q |
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| T |
41572284 |
ggtgtcaaccattgcatctttttcctttctatcttaatgtgcttctgtattcttttatccttacaatattaaaattatatgtgtgtatatcttgcttcca |
41572383 |
T |
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| Q |
520 |
ctttcaacttttcatcaaatatatcaaaacttaaa |
554 |
Q |
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| T |
41572384 |
ctttcaacttttcatcaaatatatcaaagcttaaa |
41572418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 41572133 - 41572206
Alignment:
| Q |
269 |
ttcgattgatgaaaacaaaatatacgattctctaacaacgtagtgctcacggagaatcacactgcagcttcaac |
342 |
Q |
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| T |
41572133 |
ttcgattgatgaaaacaaaatatacgattctctaacaacgtagtgctcacggagaatcatactgcagcttcaac |
41572206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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