View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655-Insertion-3 (Length: 397)
Name: NF4655-Insertion-3
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 9643245 - 9642855
Alignment:
| Q |
7 |
acggtccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9643245 |
acggcccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagc |
9643146 |
T |
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| Q |
107 |
tgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttaggt |
206 |
Q |
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| T |
9643145 |
tgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaaaattttaggactttttggattgttaggt |
9643046 |
T |
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| Q |
207 |
tgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgata |
306 |
Q |
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| T |
9643045 |
tgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgcta |
9642946 |
T |
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| Q |
307 |
gagccatttgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctag |
397 |
Q |
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| T |
9642945 |
gagccatctgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctag |
9642855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 10545177 - 10544801
Alignment:
| Q |
21 |
gtgcgaccaaagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagctgaatcttcagcac |
120 |
Q |
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| T |
10545177 |
gtgcgaccaaaattggttcctccatggtacatgtagtaattgttaaatacaccaccattttggaaaaaacgtgcaacagcataagctgaatcttcagcag |
10545078 |
T |
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| Q |
121 |
ttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgaca |
220 |
Q |
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| T |
10545077 |
ttctatgtggagctctttcaccccatttttgaaaccatccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgaca |
10544978 |
T |
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| Q |
221 |
ataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccatttgagca |
320 |
Q |
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| T |
10544977 |
ataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagca |
10544878 |
T |
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| Q |
321 |
gcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctag |
397 |
Q |
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| T |
10544877 |
gcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctag |
10544801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 279028 - 278720
Alignment:
| Q |
7 |
acggtccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaattgtttaatacaccaccattttggaaaaaacgtgccacagagaaagc |
106 |
Q |
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|||| ||||| ||||| || ||||| |||||||||||||| |||| ||||||||| | | ||||||||||||| || |||||||| || || || || |
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| T |
279028 |
acgggccacccgcggttcgtccaaaatttgttcctccatgatacaagtagtaattttggagggcaccaccattttgaaagaaacgtgcaactgaaaatgc |
278929 |
T |
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| Q |
107 |
tgaatcttcagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaagattttaggactttttggattgttaggt |
206 |
Q |
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| T |
278928 |
tgaatcttcagctgttctatgtggcctcctttcaccccatttttggaaccagccaacccaattctctgtaaatattttagggcttttaggattgtttggc |
278829 |
T |
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| Q |
207 |
tgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgata |
306 |
Q |
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| ||| ||| ||||||||| |||||||| |||| ||| |||| ||||||| || ||| | |||||||||||||| |||||||| ||||| | || |
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| T |
278828 |
ttgaaagtgtcacaataatagccattgcatgtatcgataatagtggctggagcatttttttgcttgcacatgatccatgggacaccaatattttgagcta |
278729 |
T |
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| Q |
307 |
gagccattt |
315 |
Q |
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| T |
278728 |
aagccattt |
278720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 18584494 - 18584445
Alignment:
| Q |
249 |
ggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgtt |
298 |
Q |
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| T |
18584494 |
ggttgaggagcatcaggttgttggcacatgatccatgggactccaatgtt |
18584445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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