View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655-Insertion-4 (Length: 370)
Name: NF4655-Insertion-4
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655-Insertion-4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 37750450 - 37750820
Alignment:
| Q |
7 |
actaatgagataatgcttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaatcacgatacaaaaatttcgaaga |
106 |
Q |
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| T |
37750450 |
actaatgagataatgcttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaatcacgatacaaaaatttcgaaga |
37750549 |
T |
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| Q |
107 |
attatatctttactgctactatgtggcgggaactgttggtttgatgagtgttccagtaatgggaatcgcgccagaatcccttatccctgctcaaagtgta |
206 |
Q |
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| T |
37750550 |
attatatctttactgctactatgtggcgggaactgttggtttgatgagtgttccagtaatgggaatcgcgccagaatcccttatccctgctcaaagtgta |
37750649 |
T |
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| Q |
207 |
tataaatcagcattatatcttggtattggaaatcaactcacaaacattcttagagatgtaggggaggagtaagtttataattctaaccgatttgcttcac |
306 |
Q |
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| T |
37750650 |
tataaatcagcattatatcttggtattggaaatcaactcacaaacattcttagagatgtaggggaggagtaagtttataattctaaccgatttgcttcac |
37750749 |
T |
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| Q |
307 |
ttagttgatattcacttttctgcttaattatttta-------atatgatattaattaaagaattatatgat |
370 |
Q |
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| T |
37750750 |
ttagttgatattcacttttctgcttaattattttaatatgatatatgatattaattaaagaattatatgat |
37750820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 37756251 - 37756312
Alignment:
| Q |
22 |
cttgtgttttattgcagccttttagggacatgatagaaggtatgagaatggatacgaggaaa |
83 |
Q |
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| T |
37756251 |
cttgtgtttgattgcagtctttctgggacatgatagaaggtgtgagaatggatacgaggaaa |
37756312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 37756550 - 37756614
Alignment:
| Q |
137 |
aactgttggtttgatgagtgttccagtaatgggaatcgcgccagaatcccttatccctgctcaaa |
201 |
Q |
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| T |
37756550 |
aactgttggattgacgagcattccaataatgggaatcgcgccagaatccatcacccctgctcaaa |
37756614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 32687658 - 32687540
Alignment:
| Q |
51 |
atgatagaaggtatgagaatggatacgaggaaatcacgatacaaaaatttcgaagaattatatctttactgctactatgtggcgggaactgttggtttga |
150 |
Q |
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| T |
32687658 |
atgatagaaggaatgagaatggatcttaagaagtcaagatacaaaagctttgatgaactatatctctactgttactatgttgctggaactgttggtttaa |
32687559 |
T |
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| Q |
151 |
tgagtgttccagtaatggg |
169 |
Q |
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| T |
32687558 |
tgagtgttccggtcatggg |
32687540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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