View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655-Insertion-5 (Length: 205)
Name: NF4655-Insertion-5
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 21014777 - 21014887
Alignment:
| Q |
16 |
cacaaacacattattaacct-aaatttgttcttttgaaattgaatggtttggatgtagtgatgagatgtgatatgatatgtagagtacaaaaacttaata |
114 |
Q |
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| T |
21014777 |
cacaaacacattattaaccttaaatttgttcttttgaaattgaatggtttggatgtagtgatgagatgcgacatgatatatacagtacaaaagcttaata |
21014876 |
T |
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| Q |
115 |
aattgggtctt |
125 |
Q |
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| T |
21014877 |
aattgggtctt |
21014887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 47891763 - 47891879
Alignment:
| Q |
10 |
cccattcacaaacacattattaacctaa-atttgttcttttgaaattgaatggtttggatgtagtgatgagatgtgatatgatatgtagagtacaaaaac |
108 |
Q |
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||||| |||||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| | |
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| T |
47891763 |
cccatacacaaacacattattaaccttagatttattcttttgaaattgaatggattggatgtagtgatgagatgtgacatgatatgtagggtacaaaagc |
47891862 |
T |
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| Q |
109 |
ttaataaattgggtctt |
125 |
Q |
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| T |
47891863 |
ttaataaattgggtctt |
47891879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 31226093 - 31225975
Alignment:
| Q |
8 |
cacccattcacaaacacattattaacct-aaatttgttcttttgaaattgaatggtttggatgtagtgatgagatgtgatatgatatgtagagtacaaaa |
106 |
Q |
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| T |
31226093 |
cacccatacacaaacagattattaaccttaaatttgttcttctgaaattgaatggtttggatatagtgatgagatgatacatgatatgtagagtacaaaa |
31225994 |
T |
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| Q |
107 |
acttaataaattgggtctt |
125 |
Q |
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| T |
31225993 |
gctcaataaattgggtctt |
31225975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 12299283 - 12299167
Alignment:
| Q |
9 |
acccattcacaaacacattattaacctaa-atttgttcttttgaaattgaatggtttggatgtagtgatgagatgtgatatgatatgtagagtacaaaaa |
107 |
Q |
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|||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||| ||| |
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| T |
12299283 |
acccatacacaaacacattattaaccttagatttgttcttttgaaattgaatggtgtggatgtagtgatgacatgcaacatgatatgtagagtac-aaag |
12299185 |
T |
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| Q |
108 |
cttaataaattgggtctt |
125 |
Q |
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||||||||||| |||||| |
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| T |
12299184 |
cttaataaattaggtctt |
12299167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 33522835 - 33522952
Alignment:
| Q |
9 |
acccattcacaaacacattattaacctaa-atttgttcttttgaaattgaatggtttggatgtagtgatgagatgtgatatgatatgtagagtacaaaaa |
107 |
Q |
| |
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|||||| |||||||||||||||||||| | ||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
33522835 |
acccatacacaaacacattattaaccttagatttgctcttttgaaattgaatagtttagatgtagtgatgagatgtgacatgatatgtagagtacaaaag |
33522934 |
T |
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| Q |
108 |
cttaataaattgggtctt |
125 |
Q |
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||||| ||||| |||||| |
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| T |
33522935 |
cttaacaaattaggtctt |
33522952 |
T |
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