View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655_low_1 (Length: 388)
Name: NF4655_low_1
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 108 - 378
Target Start/End: Complemental strand, 25483421 - 25483151
Alignment:
| Q |
108 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25483421 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttatc |
25483322 |
T |
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| Q |
208 |
tgaaattcttcgtcctcctgctgtgaagaccaccattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca |
307 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25483321 |
tgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca |
25483222 |
T |
|
| Q |
308 |
aatgaaggtaagtttgtgccctgtctctttctttttaacttttaacagtattaaaatatcctcaccctttg |
378 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25483221 |
aatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccctttg |
25483151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 108 - 378
Target Start/End: Original strand, 25860614 - 25860884
Alignment:
| Q |
108 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25860614 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttatc |
25860713 |
T |
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| Q |
208 |
tgaaattcttcgtcctcctgctgtgaagaccaccattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca |
307 |
Q |
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| T |
25860714 |
tgaaattcttcgtcctcctgctgtgaagaccaacattgccgactacaaaaccattgccgacaatcatactttaacgactacaaaaccatttcccaaccca |
25860813 |
T |
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| Q |
308 |
aatgaaggtaagtttgtgccctgtctctttctttttaacttttaacagtattaaaatatcctcaccctttg |
378 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25860814 |
aatgaaggtaagtttgtgtcctgtctctttctttttaactttcaacagtattaaaatatcctcaccctttg |
25860884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 25886332 - 25886509
Alignment:
| Q |
43 |
acccttcatcaatatgttatgtgaatccgtggttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccaactggtctcca |
142 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25886332 |
acccttcatcaatatgttatgtgaatccgtgcttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccgactggtctcca |
25886431 |
T |
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| Q |
143 |
tttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttctgaaattcttcgt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
25886432 |
tttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggaccgtaagtatttttctgaatttcttcgt |
25886509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 25604235 - 25604337
Alignment:
| Q |
43 |
acccttcatcaatatgttatgtgaatccgtggttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccaactggtctcca |
142 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25604235 |
acccttcatcaatatgttatgtgaatccgtgcttattatcttgccttatgaataaacagaagttgaagttgctaagatggaatataccgactggtctcca |
25604334 |
T |
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| Q |
143 |
ttt |
145 |
Q |
| |
|
||| |
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|
| T |
25604335 |
ttt |
25604337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 25603623 - 25603726
Alignment:
| Q |
108 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc |
207 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
25603623 |
aagttgctaagatggaatataccgactggtctccattgctgaaggaacactgcgaacggtatcttgctaagaagaaagaagaggaccgtaagtatttttc |
25603722 |
T |
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| Q |
208 |
tgaa |
211 |
Q |
| |
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|||| |
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| T |
25603723 |
tgaa |
25603726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 25884455 - 25884567
Alignment:
| Q |
108 |
aagttgctaagatggaatataccaactggtctccatttctgaaggaaaactgcgaacggtatcttgctaagaagaaagaagaggacagaaagtatttttc |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
25884455 |
aagttgctaagatggaatataccgactggtctccattgctgaaggaaaactgcgaaaagtatcttgctaagcagaaagaagaggaccgtaagtatttttc |
25884554 |
T |
|
| Q |
208 |
tgaaattcttcgt |
220 |
Q |
| |
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|||| |||||||| |
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| T |
25884555 |
tgaatttcttcgt |
25884567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 25603804 - 25603881
Alignment:
| Q |
304 |
cccaaatgaaggtaagtttgtgccctgtctctttcttttt---aacttttaacagtattaaaatatcctcaccctttg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
25603804 |
cccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccctttg |
25603881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 25885880 - 25885956
Alignment:
| Q |
305 |
ccaaatgaaggtaagtttgtgccctgtctctttcttttt---aacttttaacagtattaaaatatcctcaccctttg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
25885880 |
ccaaatgaaggtaagtttgtgccctgtctctttctttttaacaactttcaacactattaaaatatcctcaccctttg |
25885956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 25483762 - 25483726
Alignment:
| Q |
44 |
cccttcatcaatatgttatgtgaatccgtggttatta |
80 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
25483762 |
cccttgatcaatatgttatgtgaatccgtgcttatta |
25483726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 25884234 - 25884270
Alignment:
| Q |
44 |
cccttcatcaatatgttatgtgaatccgtggttatta |
80 |
Q |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
25884234 |
cccttgatcaatatgttatgtgaatccgtgcttatta |
25884270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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