View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4655_low_5 (Length: 250)

Name: NF4655_low_5
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4655_low_5
NF4655_low_5
[»] chr2 (7 HSPs)
chr2 (27-250)||(35549293-35549513)
chr2 (39-140)||(14392073-14392172)
chr2 (34-139)||(38411725-38411826)
chr2 (27-112)||(29171087-29171171)
chr2 (33-147)||(5816800-5816913)
chr2 (27-111)||(17323096-17323179)
chr2 (27-103)||(41974052-41974127)
[»] chr5 (6 HSPs)
chr5 (39-147)||(33625320-33625427)
chr5 (39-147)||(33623033-33623140)
chr5 (27-151)||(36070367-36070490)
chr5 (32-151)||(13860503-13860620)
chr5 (33-147)||(13857821-13857934)
chr5 (32-71)||(13860427-13860466)
[»] chr1 (10 HSPs)
chr1 (27-151)||(11670419-11670544)
chr1 (34-151)||(11672100-11672216)
chr1 (39-147)||(10163242-10163349)
chr1 (39-122)||(35238592-35238673)
chr1 (43-151)||(36814483-36814589)
chr1 (32-151)||(10833837-10833955)
chr1 (27-129)||(4032651-4032754)
chr1 (27-146)||(11673553-11673676)
chr1 (39-123)||(3448569-3448652)
chr1 (80-149)||(3446963-3447032)
[»] chr8 (4 HSPs)
chr8 (13-139)||(21240544-21240669)
chr8 (45-147)||(38063776-38063879)
chr8 (91-140)||(13014263-13014312)
chr8 (32-76)||(13012611-13012655)
[»] chr6 (5 HSPs)
chr6 (39-139)||(2512188-2512287)
chr6 (39-147)||(1517886-1517995)
chr6 (39-147)||(1519973-1520082)
chr6 (39-147)||(1515795-1515904)
chr6 (32-151)||(7295282-7295400)
[»] chr3 (2 HSPs)
chr3 (33-151)||(52658544-52658661)
chr3 (39-123)||(3956505-3956589)
[»] chr7 (5 HSPs)
chr7 (39-121)||(40500980-40501063)
chr7 (91-151)||(41400907-41400967)
chr7 (32-151)||(48013188-48013305)
chr7 (13-147)||(33541992-33542125)
chr7 (91-139)||(46950256-46950304)
[»] chr4 (2 HSPs)
chr4 (39-139)||(3070900-3070998)
chr4 (91-134)||(4044471-4044514)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 35549513 - 35549293
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtc 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35549513 tgtctgacacaaatcatatagaattactttcgattgagggaacttatgaattcttttttgttagttttgtcttattctctctaaacgcacttaaaaagtc 35549414  T
Q  127 tctatttaaatttcactttaggcctnnnnnnnntacattgggccggtcttgtaagagaattgcttatctcttaatttatcaattgtttttacttcaaaga 226  Q
    |||||||||||||  |||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35549413 tctatttaaattttgctttaggcgt---aaaaatacattgggccggtcttgtaagagaattgcttatctcttaatttatcaattgtttttacttcaaaga 35549317  T
Q  227 aaaacaaattgtttgtactcgtga 250  Q
    ||||||||||||||||||||||||    
T  35549316 aaaacaaattgtttgtactcgtga 35549293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 14392073 - 14392172
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    ||||||||||||||||||| ||||||||||||| |||||  |||||||||| |||||| |||||||||| |||| |||||||||   |||||||||||||    
T  14392073 atcatatagaattactttcaattgagggaacttatgaat--ttttttgttaattttgttttattctctccaaacgcacttaaaagacctctatttaaatt 14392170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 38411826 - 38411725
Alignment:
Q  34 cacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctattt 133  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||  |||||| ||| ||||||||||||||||||| || ||| ||||| |  |||||||    
T  38411826 cacaaatcatataaaattactttcgattgaaggaacttatgaat--ttttttcttaattttgtcttattctctctacacgcacataaaagg--tctattt 38411731  T
Q  134 aaattt 139  Q
    ||||||    
T  38411730 aaattt 38411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 29171171 - 29171087
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaactt-ttgaattcttttttgttagttttgtcttattctctctaaac 112  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||| | ||||||  |||| ||| |||||||||||||| |||||||    
T  29171171 tgtctgacacacatcatatagaattactttcgattgaaggaacttatggaattc--ttttcttaattttgtcttattctatctaaac 29171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 5816800 - 5816913
Alignment:
Q  33 acacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatt 132  Q
    ||||| |||||||| ||||||||| |||||||||||||| || | | |||||| |||  ||| |||| || |||||||||  ||||||||  | ||||||    
T  5816800 acacacatcatataaaattacttttgattgagggaacttatggaat-ttttttcttaaatttctcttgttatctctaaacggacttaaaatatttctatt 5816898  T
Q  133 taaatttcactttag 147  Q
    |||||||||||||||    
T  5816899 taaatttcactttag 5816913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 17323179 - 17323096
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttg-aattcttttttgttagttttgtcttattctctctaaa 111  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||| || |||||||||    || |||||||||||||| ||||||    
T  17323179 tgtctgacacacatcatatagaattactttcgattgaaggaacttatggaattcttttca--taattttgtcttattctatctaaa 17323096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 41974052 - 41974127
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttga-attcttttttgttagttttgtcttattc 103  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||| ||| ||||  |||| ||| |||||||||||||    
T  41974052 tgtccgacacacatcatatagaattactttccattgaaggaacttatgacattc--ttttcttaattttgtcttattc 41974127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 33625427 - 33625320
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    |||||||| ||||||||| |||||||| ||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  33625427 atcatatataattacttttgattgaggaaacttatgaatt-ttttttgttaattttgtcttattctctctaaacgcacttaaaaaatctttatttaaatt 33625329  T
Q  139 tcactttag 147  Q
    || ||||||    
T  33625328 tcgctttag 33625320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 33623140 - 33623033
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    |||||||| ||||||||| |||||||| || || |||||| |||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  33623140 atcatatataattacttttgattgaggaaatttatgaatt-ttttttgttaattttgtcttattctctctaaacgcacttaaaaaatctttatttaaatt 33623042  T
Q  139 tcactttag 147  Q
    || ||||||    
T  33623041 tcgctttag 33623033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 36070490 - 36070367
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtc 126  Q
    |||| |||||| ||||||||||||| ||||||| | ||| ||||| || ||| |||||| ||| |||||||| ||||||||||||| ||||| ||||| |    
T  36070490 tgtctgacacacatcatatagaattgctttcgactcaggaaacttatggatttttttttcttaattttgtctaattctctctaaacgcactt-aaaagcc 36070392  T
Q  127 tctatttaaatttcactttaggcct 151  Q
    |||||||||||||| | ||||||||    
T  36070391 tctatttaaatttcgcattaggcct 36070367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 13860503 - 13860620
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctat 131  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||| |||||  |||  ||||| |||||||||||||||||| |||||| | |  |||    
T  13860503 gacacacatcatatagaattacttttgattgagggaacttatgaatt-tttttaatta-atttgttttattctctctaaacacatttaaaatgcccttat 13860600  T
Q  132 ttaaatttcactttaggcct 151  Q
    ||||||||| || |||||||    
T  13860601 ttaaatttcgctctaggcct 13860620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 13857934 - 13857821
Alignment:
Q  33 acacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatt 132  Q
    ||||| |||||||||||||||||| | ||||||| |||| || ||| |||||  ||| ||| || |||||||||||||||||| |||||| | |||| ||    
T  13857934 acacacatcatatagaattacttttggttgagggtacttatggattttttttaattaattt-gtattattctctctaaacacatttaaaatgcctctgtt 13857836  T
Q  133 taaatttcactttag 147  Q
    |||||||| ||||||    
T  13857835 taaatttcgctttag 13857821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 13860427 - 13860466
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaactt 71  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  13860427 gacacacatcatataaaattactttcgattgagggaactt 13860466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 11670544 - 11670419
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttg-aattcttttttgttagttttgtcttattctctctaaacacacttaaaaagt 125  Q
    |||| |||||| |||||||| ||||| |||||||||||||||||| || |||| |||||| |   |||||||||||| |||| |||| ||||||||| |     
T  11670544 tgtcagacacacatcatataaaattattttcgattgagggaacttatggaatttttttttctatattttgtcttattatctccaaacgcacttaaaaggc 11670445  T
Q  126 ctctatttaaatttcactttaggcct 151  Q
    ||||||||||||||| ||||||||||    
T  11670444 ctctatttaaatttcgctttaggcct 11670419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 11672216 - 11672100
Alignment:
Q  34 cacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctattt 133  Q
    |||| |||||||| ||||| |||||||||| ||||||| || | | |||||| | | |||||||||||||||||||||  ||||||||| ||||||||||    
T  11672216 cacacatcatataaaattattttcgattgaaggaacttatggaatttttttt-taaattttgtcttattctctctaaatgcacttaaaaggtctctattt 11672118  T
Q  134 aaatttcactttaggcct 151  Q
    ||||||| ||||||||||    
T  11672117 aaatttcgctttaggcct 11672100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 10163242 - 10163349
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    ||||||||||||||||||||||||||||||||| || | | |||||| ||| |||||||||||||| ||| ||| || ||||||   |||||||||||||    
T  10163242 atcatatagaattactttcgattgagggaacttatggaat-ttttttcttaattttgtcttattctatctcaacgcatttaaaagacctctatttaaatt 10163340  T
Q  139 tcactttag 147  Q
    || ||||||    
T  10163341 tcgctttag 10163349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 35238673 - 35238592
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaa 122  Q
    |||||||| ||||||||| |||||||||||||| ||||||  ||||||||| |||| ||||||||||||||||| |||||||||    
T  35238673 atcatatataattacttttgattgagggaacttatgaatt--tttttgttaattttatcttattctctctaaacgcacttaaaa 35238592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 36814483 - 36814589
Alignment:
Q  43 tatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatttcac 142  Q
    |||| ||||| |||||||||||||||||| || | | |||||| |||  ||||||||||||||||| | ||||||||||| |||||||||||| |||||     
T  36814483 tataaaattattttcgattgagggaacttatggaat-ttttttcttatgtttgtcttattctctctga-cacacttaaaatgtctctatttaagtttcat 36814580  T
Q  143 tttaggcct 151  Q
    |||||||||    
T  36814581 tttaggcct 36814589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 10833837 - 10833955
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctat 131  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||| | | |||| ||| |||||||||||||| ||||||| ||  |||||  | | | |    
T  10833837 gacacacatcatatagaattactttcgattgaaggaacttatgaaat-tcttttcttaattttgtcttattctatctaaacgcatataaaagttatgtgt 10833935  T
Q  132 ttaaatttcactttaggcct 151  Q
    ||||||||| ||||||||||    
T  10833936 ttaaatttcgctttaggcct 10833955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 4032754 - 4032651
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttg-aattcttttttgttagttttgtcttattctctctaaacacacttaaaaagt 125  Q
    |||| ||||||  ||||||||||||| ||||||||||||||| || || |||| |||| | ||  |||||||||||||||||| || |||||||||| ||    
T  4032754 tgtctgacacacgtcatatagaattattttcgattgagggaatttatggaatttttttcttttttttttgtcttattctctctgaatacacttaaaatgt 4032655  T
Q  126 ctct 129  Q
    ||||    
T  4032654 ctct 4032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 11673676 - 11673553
Alignment:
Q  27 tgtccgacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgtt------agttttgtcttattctctctaaacacacttaa 120  Q
    |||| |||||| |||||||| ||||| |||||||||||||||||| ||| || |||||| ||      | |||||||||||||||| ||| |||||||||    
T  11673676 tgtcagacacacatcatata-aattattttcgattgagggaacttatgacttttttttttttcttcttaattttgtcttattctctttaaccacacttaa 11673578  T
Q  121 aaagtctctatttaaatttcacttta 146  Q
    |||  |||||||||||||||| ||||    
T  11673577 aaa-cctctatttaaatttcatttta 11673553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 3448652 - 3448569
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaa 123  Q
    ||||||||||||||||||  ||||||| ||||| |||||| |||||| ||| |||| ||||||||||||||| |  |||||||||    
T  3448652 atcatatagaattacttttcattgaggaaacttatgaatt-ttttttcttaattttatcttattctctctaatcgaacttaaaaa 3448569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 3447032 - 3446963
Alignment:
Q  80 ttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatttcactttaggc 149  Q
    |||||| ||| |||||||||||||||| ||||||||||| ||| |  |||||| ||||||| ||||||||    
T  3447032 tttttttttaattttgtcttattctctttaaacacacttgaaaggcttctattcaaatttcgctttaggc 3446963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 21240544 - 21240669
Alignment:
Q  13 atactcatattaaatgtccgacacaaatcatatagaattactttcgattgagggaactttt-gaattcttttttgttagttttgtcttattctctctaaa 111  Q
    ||||||||||| | ||||  ||||| ||||||||||||||||||||||||||| ||||  | |||||  | ||| ||| |||||||||||||||||||||    
T  21240544 atactcatatttagtgtctcacacacatcatatagaattactttcgattgaggaaactgatagaatt--tctttcttaattttgtcttattctctctaaa 21240641  T
Q  112 cacacttaaaaagtctctatttaaattt 139  Q
    || |||||||||  ||||||||||||||    
T  21240642 caaacttaaaaaacctctatttaaattt 21240669  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 38063879 - 38063776
Alignment:
Q  45 tagaattactttcgattgagggaacttttgaattcttttt-tgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatttcact 143  Q
    ||||||||||||||||||||| ||||| |||||| ||||| | ||| |||| ||||| ||| ||||||| ||  ||||| | ||||||||||||||| ||    
T  38063879 tagaattactttcgattgaggaaacttatgaattttttttctcttaattttatcttactctatctaaacgcatgtaaaatgcctctatttaaatttcgct 38063780  T
Q  144 ttag 147  Q
    ||||    
T  38063779 ttag 38063776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 13014312 - 13014263
Alignment:
Q  91 ttttgtcttattctctctaaacacacttaaaaagtctctatttaaatttc 140  Q
    |||||||||||| ||||||||| ||||||||||   ||||||||||||||    
T  13014312 ttttgtcttattttctctaaacgcacttaaaaaacatctatttaaatttc 13014263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 13012655 - 13012611
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaacttttgaa 76  Q
    |||||| |||||||||| |||||||| ||| ||||||||||||||    
T  13012655 gacacacatcatatagacttactttcaattaagggaacttttgaa 13012611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 2512287 - 2512188
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    |||||||| |||||||||||||||||||||||| |||||| |||||| ||  |||||||| ||||||||| ||| ||||||||||  |||||||||||||    
T  2512287 atcatataaaattactttcgattgagggaacttatgaatt-ttttttattgattttgtctcattctctctgaactcacttaaaaaacctctatttaaatt 2512189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 1517995 - 1517886
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattctt-ttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaat 137  Q
    ||||||||||||||||||| ||||||| ||||| ||| || || |||||||| |||||||||||| |||||| || || || ||| |||||||| |||||    
T  1517995 atcatatagaattactttcaattgaggaaacttatgattttttcttttgttaattttgtcttattttctctagacgcatttgaaaggtctctatctaaat 1517896  T
Q  138 ttcactttag 147  Q
    ||| ||||||    
T  1517895 ttcgctttag 1517886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 1520082 - 1519973
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattctt-ttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaat 137  Q
    ||||||||||||||||||| ||||||| ||||| ||| || || |||||||| |||||||||||| |||||| || || || ||| |||||||| |||||    
T  1520082 atcatatagaattactttcaattgaggaaacttatgattttttcttttgttaattttgtcttattttctctagacgcatttgaaaggtctctatctaaat 1519983  T
Q  138 ttcactttag 147  Q
    ||| ||||||    
T  1519982 ttcgctttag 1519973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 1515904 - 1515795
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattctt-ttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaat 137  Q
    ||||||||||||||||||| ||||||| ||||| ||| || || |||||||| |||||||||||| || ||| || || || ||| |||||||| |||||    
T  1515904 atcatatagaattactttcaattgaggaaacttatgattttttcttttgttaattttgtcttattttcgctagacgcatttgaaaggtctctatctaaat 1515805  T
Q  138 ttcactttag 147  Q
    ||| ||||||    
T  1515804 ttcgctttag 1515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 7295400 - 7295282
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctat 131  Q
    |||||| ||| |||| ||||||||| |||| | ||||||| |||| | | |||| ||| |||||||||||||| ||||||| ||  ||||| | |||| |    
T  7295400 gacacacatcgtatataattacttttgattaaaggaacttatgaaat-tattttcttaattttgtcttattctatctaaacgcatataaaatgcctctgt 7295302  T
Q  132 ttaaatttcactttaggcct 151  Q
    ||||||||| ||||| ||||    
T  7295301 ttaaatttcgctttaagcct 7295282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 52658544 - 52658661
Alignment:
Q  33 acacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatt 132  Q
    ||||| |||||||| ||||| ||| | |||||||||||| |||||| |||||| ||| |||||||||||| ||||||||| ||||||||||  || ||||    
T  52658544 acacatatcatataaaattatttttgtttgagggaacttatgaatt-ttttttcttaattttgtcttattttctctaaacgcacttaaaaaacctttatt 52658642  T
Q  133 taaatttcactttaggcct 151  Q
    |||||||| ||||| ||||    
T  52658643 taaatttcgctttaagcct 52658661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 3956589 - 3956505
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaa 123  Q
    ||||||||||||||||||||||||||||||||| || |  |||| || ||  |||| ||||||||||||| ||| ||||||||||    
T  3956589 atcatatagaattactttcgattgagggaacttatggaaactttctttttgtttttctcttattctctctgaactcacttaaaaa 3956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 40500980 - 40501063
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttt-tttgttagttttgtcttattctctctaaacacacttaaa 121  Q
    |||||||| ||||| |||||||| ||| ||||| |||||| ||| ||| ||| |||||||||||||||||||||||||||||||    
T  40500980 atcatataaaattattttcgattaaggaaacttatgaattttttcttttttaattttgtcttattctctctaaacacacttaaa 40501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 41400907 - 41400967
Alignment:
Q  91 ttttgtcttattctctctaaacacacttaaaaagtctctatttaaatttcactttaggcct 151  Q
    |||||||||||| |||||||||||||||||||||  | |||||||||||| ||||||||||    
T  41400907 ttttgtcttattttctctaaacacacttaaaaagcttttatttaaatttcgctttaggcct 41400967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 48013305 - 48013188
Alignment:
Q  32 gacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctat 131  Q
    |||||| |||||||||||||||| |||||||||  ||| | || ||| |||||| | | |||||||||||||||| ||||||||||| ||||| || |||    
T  48013305 gacacacatcatatagaattactatcgattgagaaaacatatggatttttttttataa-ttttgtcttattctctataaacacactt-aaaagcctttat 48013208  T
Q  132 ttaaatttcactttaggcct 151  Q
    || |||||| || |||||||    
T  48013207 ttgaatttcgctctaggcct 48013188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 33542125 - 33541992
Alignment:
Q  13 atactcatattaaatgtccgacacaaatcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaac 112  Q
    ||||||||||| |||||| |||||  |||| ||| |||||||||| |||||| ||| |  |||| | |||| | | | |||| | ||||| |||||||||    
T  33542125 atactcatatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattagtgaaattttttct-tcatttttatgttattatctctaaac 33542027  T
Q  113 acacttaaaaagtctctatttaaatttcactttag 147  Q
    ||||||||||  |||||||||||||||| ||||||    
T  33542026 acacttaaaatatctctatttaaatttcgctttag 33541992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 46950256 - 46950304
Alignment:
Q  91 ttttgtcttattctctctaaacacacttaaaaagtctctatttaaattt 139  Q
    |||||| |||||||||||| ||| ||||||||  |||||||||||||||    
T  46950256 ttttgtgttattctctctatacatacttaaaagatctctatttaaattt 46950304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 3070998 - 3070900
Alignment:
Q  39 atcatatagaattactttcgattgagggaacttttgaattcttttttgttagttttgtcttattctctctaaacacacttaaaaagtctctatttaaatt 138  Q
    |||||| | |||||||||  ||||||||||||| ||||||  ||||| ||| |||| | ||||||||||||||| |||||||||   || ||||||||||    
T  3070998 atcatagataattacttttcattgagggaacttatgaatt--tttttcttaattttattttattctctctaaacgcacttaaaatacctatatttaaatt 3070901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 4044514 - 4044471
Alignment:
Q  91 ttttgtcttattctctctaaacacacttaaaaagtctctattta 134  Q
    |||||||||||||||||||||| || |||||| |||||||||||    
T  4044514 ttttgtcttattctctctaaacgcatttaaaaggtctctattta 4044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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