View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4655_low_7 (Length: 237)
Name: NF4655_low_7
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4655_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 24352668 - 24352539
Alignment:
| Q |
31 |
agaagcaaaggtgaatagtaatgggtattttcagtagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
130 |
Q |
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| T |
24352668 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgtcccccttatataagtgat |
24352569 |
T |
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| Q |
131 |
cagaggttcggttcttgactcatgcgtatg |
160 |
Q |
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| T |
24352568 |
cagaggttcggttcttgattcatgtgtatg |
24352539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 24310326 - 24310198
Alignment:
| Q |
31 |
agaagcaaaggtgaatagtaatgggtattttcagtagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
130 |
Q |
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|||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| | ||||| |
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| T |
24310326 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgt-ccccttatataagtgat |
24310228 |
T |
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| Q |
131 |
cagaggttcggttcttgactcatgcgtatg |
160 |
Q |
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|||||||||||||||||| ||||| ||||| |
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| T |
24310227 |
cagaggttcggttcttgattcatgtgtatg |
24310198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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