View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4655_low_8 (Length: 205)

Name: NF4655_low_8
Description: NF4655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4655_low_8
NF4655_low_8
[»] chr1 (3 HSPs)
chr1 (1-179)||(18431579-18431755)
chr1 (6-179)||(22788332-22788502)
chr1 (86-167)||(6154604-6154683)
[»] chr2 (1 HSPs)
chr2 (1-179)||(16916312-16916486)
[»] chr7 (2 HSPs)
chr7 (1-178)||(46437312-46437485)
chr7 (102-168)||(38663019-38663084)
[»] chr6 (2 HSPs)
chr6 (1-179)||(5014026-5014213)
chr6 (6-168)||(16692978-16693140)
[»] chr5 (4 HSPs)
chr5 (1-179)||(424703-424876)
chr5 (1-179)||(18113698-18113878)
chr5 (133-168)||(25634440-25634475)
chr5 (41-78)||(17074657-17074694)
[»] chr3 (3 HSPs)
chr3 (6-179)||(26555481-26555647)
chr3 (6-98)||(52118379-52118466)
chr3 (132-168)||(2125280-2125316)
[»] chr8 (2 HSPs)
chr8 (6-97)||(28535248-28535334)
chr8 (133-179)||(28535198-28535244)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 18431579 - 18431755
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatg 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  18431579 attgtttgtgagagtagagaagaggagaagaaacaatacgttttgttttgtttgtgttgtgtgtgtttttcaatttccactttccttcccgtaccttatg 18431678  T
Q  101 tttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    |||||||||||||||  ||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  18431679 tttatgcatataaaa--aattaaaattaggctagaatctggtgtggcagctgccacaccatgtttcactctacatccgc 18431755  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 22788332 - 22788502
Alignment:
Q  6 ttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttat 105  Q
    |||||||||||||||||||||||||| ||   |||||  |||||| |||| | |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  22788332 ttgtgagagtagagaagaggagaagaaac---gcgtt--gttttgtttgtatggtgtgtgttttccaatttccactttccttcccttgccatatgtttat 22788426  T
Q  106 gcatataaaaataa--taataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
     |||||||||| ||   || |||||||| ||||| || |||||||| |||||||||||||||||| || |||||||    
T  22788427 acatataaaaaaaaataaaaaattaggcaagaatctggtgtggcagttgccacaccatgtttcacactccatccgc 22788502  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 6154604 - 6154683
Alignment:
Q  86 ttcccgtgccttatgtt--tatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttca 167  Q
    |||||||||||||||||  |||||||||||||  ||    |||||||||||||| || ||| ||||||| ||||||||||||||    
T  6154604 ttcccgtgccttatgttattatgcatataaaacaaa----aattaggctagaatctggtgttgcagctgtcacaccatgtttca 6154683  T

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Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 16916312 - 16916486
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatg 100  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  16916312 attgtttgtgagagtagagaaaaggagaagaaacaatgtgttttgttttgtttgtattgtgtatattttccaatttccactttccttcccgtgccttatg 16916411  T
Q  101 tttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    ||||||||||||||||    || |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  16916412 tttatgcatataaaaa----aaaaattaggctagaatctggtgtggcagctgacacaccatgtttcactctacatccgc 16916486  T

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Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46437485 - 46437312
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatg 100  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  46437485 attgtttgtgagagtaaagaagaggagaagaaacaacgcgttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttctcgtgccttatg 46437386  T
Q  101 tttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccg 178  Q
    ||||||||||||||||    || ||||||| || ||| |  |||||||||||||||||||||||||||||||||||||    
T  46437385 tttatgcatataaaaa----aaaaattaggttataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 38663084 - 38663019
Alignment:
Q  102 ttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcac 168  Q
    ||||||||||||||| || || ||| ||  |||||| || |||||||||||||||||||||||||||    
T  38663084 ttatgcatataaaaaaaaaaaaaat-agattagaatctggtgtggcagctgccacaccatgtttcac 38663019  T

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Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 5014026 - 5014213
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaagatacaatgcgttttgttttgatt-----gtgttgtgtgtattttccaatttccactttccttcccgtgcc 95  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||     ||||||||||| ||||||||||||||||||||||||| ||||    
T  5014026 attgtttgtgagagtagagaagaggagaagaaacaacgcgttttgttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttcccatgcc 5014125  T
Q  96 ttatgtttatgcatataaaaataataat----aattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    ||||||||||||||||||||| || ||     ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  5014126 ttatgtttatgcatataaaaaaaaaaaacaaaaattaggttagaatctggtgtggcagctgccacaccatgtttcactctacatccgc 5014213  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 16693140 - 16692978
Alignment:
Q  6 ttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttat 105  Q
    |||||||||||||||||||||||||| ||   |||||  |||||| |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16693140 ttgtgagagtagagaagaggagaagaaac---gcgtt--gttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgccttatgtttat 16693046  T
Q  106 gcatataaa-----aataataataattaggctagaatttgttgtggcagctgccacaccatgtttcac 168  Q
    |||||||||     || || || |||||||| ||||| || |||||||||| ||||||||||||||||    
T  16693045 gcatataaacaaaaaaaaaaaaaaattaggcaagaatctggtgtggcagctaccacaccatgtttcac 16692978  T

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Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 424703 - 424876
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaag-atacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttat 99  Q
    ||||||||||||||| |||||||| ||||  | |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    | ||||||||    
T  424703 attgtttgtgagagttgagaagagaagaaacaaacaacgcgttttgttttgtttgtgttgtgtgtcttttccaatttccactttcc----cctgccttat 424798  T
Q  100 gtt--tatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    |||  |||||||||||||  ||    |||||||||||||| || |||||||||||||||||||||||||| | |||||||||    
T  424799 gttattatgcatataaaacaaa----aattaggctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgc 424876  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 18113698 - 18113878
Alignment:
Q  1 attgtttgtgagagtagagaagaggagaag-atacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttat 99  Q
    |||||||||||||||||||||||| ||||  | ||||   ||||||||||| ||||||||||||| |||| |||||||||||    ||||| || |||||    
T  18113698 attgtttgtgagagtagagaagagaagaaacaaacaacatgttttgttttgtttgtgttgtgtgtgtttttcaatttccact----ttcccatgtcttat 18113793  T
Q  100 gt--ttatgcatat--aaaaataataat-aattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    ||  |||   ||||  ||||| |||||| ||| |||||||||| || ||||||| |||||||||||||||||| | |||||||||    
T  18113794 gttattaaaaatataaaaaaaaaataataaataaggctagaatctggtgtggcaactgccacaccatgtttcaatgtacatccgc 18113878  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 25634440 - 25634475
Alignment:
Q  133 agaatttgttgtggcagctgccacaccatgtttcac 168  Q
    |||||||| |||||||||||||||||||||||||||    
T  25634440 agaatttggtgtggcagctgccacaccatgtttcac 25634475  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 17074694 - 17074657
Alignment:
Q  41 ttttgttttgattgtgttgtgtgtattttccaatttcc 78  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  17074694 ttttgttttggttgtgttgtgtgtattttccactttcc 17074657  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 26555647 - 26555481
Alignment:
Q  6 ttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttat 105  Q
    ||||||||| |||||||||||||||| |||   ||||  |||||| |||||| |||| | |||||||||||||||||||||||||     ||||||||||    
T  26555647 ttgtgagagaagagaagaggagaagaaaca---cgtt--gttttgtttgtgtggtgtttgttttccaatttccactttccttccc-----ttatgtttat 26555558  T
Q  106 gcatataaaaataat---aataattaggctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    ||||||||||| ||    || || ||||| ||||| || ||||||||||||||||||||||||||| || |||||||    
T  26555557 gcatataaaaaaaaataaaaaaaataggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgc 26555481  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 52118466 - 52118379
Alignment:
Q  6 ttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctta 98  Q
    ||||||||||||||||||||||||||   ||||||||  |||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  52118466 ttgtgagagtagagaagaggagaaga---aatgcgtt--gttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctta 52118379  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 2125316 - 2125280
Alignment:
Q  132 tagaatttgttgtggcagctgccacaccatgtttcac 168  Q
    |||||| || |||||||||||||||||||||||||||    
T  2125316 tagaatctggtgtggcagctgccacaccatgtttcac 2125280  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 28535334 - 28535248
Alignment:
Q  6 ttgtgagagtagagaagaggagaagatacaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctt 97  Q
    |||||||||||||||||||||||||| |||   ||||  |||||| |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  28535334 ttgtgagagtagagaagaggagaagaaaca---cgtt--gttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctt 28535248  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 28535244 - 28535198
Alignment:
Q  133 agaatttgttgtggcagctgccacaccatgtttcactctacatccgc 179  Q
    ||||| || ||||||||||||||||||||||||||| || |||||||    
T  28535244 agaatctggtgtggcagctgccacaccatgtttcacactccatccgc 28535198  T

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