View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4656-Insertion-1 (Length: 1040)

Name: NF4656-Insertion-1
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4656-Insertion-1
NF4656-Insertion-1
[»] chr3 (3 HSPs)
chr3 (453-988)||(22309375-22309903)
chr3 (98-163)||(22309900-22309965)
chr3 (811-872)||(35492791-35492851)
[»] chr6 (3 HSPs)
chr6 (898-986)||(17445196-17445285)
chr6 (826-869)||(24438288-24438330)
chr6 (811-872)||(12276234-12276294)
[»] chr1 (2 HSPs)
chr1 (819-873)||(21015968-21016021)
chr1 (826-872)||(9413811-9413856)
[»] chr2 (4 HSPs)
chr2 (816-885)||(25274819-25274887)
chr2 (819-886)||(24593382-24593448)
chr2 (840-885)||(4238786-4238830)
chr2 (819-856)||(20644010-20644047)
[»] chr7 (1 HSPs)
chr7 (819-873)||(38553824-38553877)
[»] chr5 (1 HSPs)
chr5 (840-886)||(23118040-23118085)
[»] chr4 (1 HSPs)
chr4 (819-856)||(18004471-18004508)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 453 - 988
Target Start/End: Complemental strand, 22309903 - 22309375
Alignment:
Q  453 acaacttgaggtttcattgcaatcgttgatgatagtgcaaaattgcttaaagaaggttacatattaaactttcctttgtttgtaataatttttggagtac 552  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22309903 acaacttgaggtttcattgcaatcgttgatgatagtgcaaaattacttaaagaaggttacatattaaactttccttggtttgtaataatttttggagtac 22309804  T
Q  553 tttcgtaggtgtatatttttatttttaaacaagcnnnnnnnncaaacaaggtgtatgcttcaatttggagacgatagattaagtnnnnnnnnnctggcaa 652  Q
    |||||||||||||||||||  |||||||||||||         |||||||||||||||||||||||||||||||||| ||||||         |||||||    
T  22309803 tttcgtaggtgtatatttt--tttttaaacaagcaaaaa----aaacaaggtgtatgcttcaatttggagacgatagcttaagt-aaaaaaaactggcaa 22309711  T
Q  653 tggtcattgattgtcattgaaaaaggaatttcataaacaagtatttcgtaaaatatggtgtagttatttttagtgggatccnnnnnnnaaaatcaataca 752  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  22309710 tggtcattgattgttattgaaaaaggaatttcataaacaagtatttcgtaaaatatggtgtagttatttttagtgggatcc-ttttttaaaatcaataca 22309612  T
Q  753 ataatatattttatgtttatacatgatggcgtgcaatagaaccctctcnnnnnnntttccgtaaaattagcttagttggtaagaatgatgcataatatat 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       || |||||| |||||||||||||||||||||||||||||||||||    
T  22309611 ataatatattttatgtttatacatgatggcgtgcaatagaaccctctcaaaaattttcccgtaagattagcttagttggtaagaatgatgcataatatat 22309512  T
Q  853 gtaaaggttcggggttcgaactctgaacaccacc-nnnnnnngagtctctcaaaggactaatttattcttactcaatgattatatttttgcatttttcta 951  Q
    |  ||| || ||||||||||| | ||||||||||         ||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||    
T  22309511 g-caagatttggggttcgaac-ccgaacaccaccaaaaaaaaaagtctctcaaaagactaatttattcttactcaatgattatatttttgcattttctta 22309414  T
Q  952 tg-tagagtgcgtgta-ttttgttctgtatcagaaagta 988  Q
    || |||||||||| || ||||||| ||||||| ||||||    
T  22309413 tgttagagtgcgtatatttttgttatgtatcataaagta 22309375  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 22309965 - 22309900
Alignment:
Q  98 ttggtagctaaagacggaggaatacattttatctatcaggattcttgaataattttatccacacaa 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22309965 ttggtagctaaagacggaggaatacattttatctatcagtattcttgaataattttatccacacaa 22309900  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 811 - 872
Target Start/End: Original strand, 35492791 - 35492851
Alignment:
Q  811 ccgtaaaattagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaa 872  Q
    ||||||| |||||| ||||||||||||  |||||||||||||| ||| ||||| ||||||||    
T  35492791 ccgtaaacttagctcagttggtaagaacaatgcataatatatgcaaa-gttcgaggttcgaa 35492851  T

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Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 898 - 986
Target Start/End: Complemental strand, 17445285 - 17445196
Alignment:
Q  898 ctctcaaaggactaatttattcttactcaatgattatatttttgcatttttctatg-tagagtgcgtgtattttgttctgtatcagaaag 986  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||||  |||| |||||||| ||||||||||||| ||||| ||||    
T  17445285 ctctcaaaaggctaatttattcttactcaatgattttatttttgcattttcttatgttagagtgcatgtattttgttctttatcataaag 17445196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 869
Target Start/End: Complemental strand, 24438330 - 24438288
Alignment:
Q  826 agttggtaagaatgatgcataatatatgtaaaggttcggggttc 869  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  24438330 agttggtaagaataatgcataatatatgtaaa-gttcggggttc 24438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 811 - 872
Target Start/End: Complemental strand, 12276294 - 12276234
Alignment:
Q  811 ccgtaaaattagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaa 872  Q
    ||||||| |||||| ||||||||||||  |||||||||||||| ||| ||||||| ||||||    
T  12276294 ccgtaaacttagctcagttggtaagaacaatgcataatatatgcaaa-gttcgggattcgaa 12276234  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 819 - 873
Target Start/End: Original strand, 21015968 - 21016021
Alignment:
Q  819 ttagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaac 873  Q
    |||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  21015968 ttagctcagttggtaagaacaatgcataatatatgt-aaggttcggggttcgaac 21016021  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 826 - 872
Target Start/End: Original strand, 9413811 - 9413856
Alignment:
Q  826 agttggtaagaatgatgcataatatatgtaaaggttcggggttcgaa 872  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||    
T  9413811 agttggtaagaacaatgcataatatatgt-aaggttcggggttcgaa 9413856  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 885
Target Start/End: Complemental strand, 25274887 - 25274819
Alignment:
Q  816 aaattagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaactctgaacaccac 885  Q
    ||||||||| ||||||||||||  ||||||||||||||| |||||  ||||||||||| | |||||||||    
T  25274887 aaattagctcagttggtaagaacaatgcataatatatgt-aaggtctggggttcgaaccccgaacaccac 25274819  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 819 - 886
Target Start/End: Original strand, 24593382 - 24593448
Alignment:
Q  819 ttagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaactctgaacaccacc 886  Q
    |||||| |||||||||| |  |||||||||||||| || ||| |||||||||||| ||||||||||||    
T  24593382 ttagctcagttggtaaggacaatgcataatatatgcaa-ggtccggggttcgaaccctgaacaccacc 24593448  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 840 - 885
Target Start/End: Original strand, 4238786 - 4238830
Alignment:
Q  840 atgcataatatatgtaaaggttcggggttcgaactctgaacaccac 885  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||    
T  4238786 atgcataatatatgtaa-ggttcggggttcgaactccgaccaccac 4238830  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 856
Target Start/End: Original strand, 20644010 - 20644047
Alignment:
Q  819 ttagcttagttggtaagaatgatgcataatatatgtaa 856  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  20644010 ttagctcagttggtaagaataatgcataatatatgtaa 20644047  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 819 - 873
Target Start/End: Original strand, 38553824 - 38553877
Alignment:
Q  819 ttagcttagttggtaagaatgatgcataatatatgtaaaggttcggggttcgaac 873  Q
    |||||| ||||||||||||  ||||||||||||||| |||||| |||||||||||    
T  38553824 ttagctcagttggtaagaacaatgcataatatatgt-aaggtttggggttcgaac 38553877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 840 - 886
Target Start/End: Complemental strand, 23118085 - 23118040
Alignment:
Q  840 atgcataatatatgtaaaggttcggggttcgaactctgaacaccacc 886  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  23118085 atgcataatatatgtaa-ggtttggggttcgaactctggacaccacc 23118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 856
Target Start/End: Original strand, 18004471 - 18004508
Alignment:
Q  819 ttagcttagttggtaagaatgatgcataatatatgtaa 856  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  18004471 ttagctcagttggtaagaataatgcataatatatgtaa 18004508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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