View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-11 (Length: 190)
Name: NF4656-Insertion-11
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 6e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 37935130 - 37934952
Alignment:
| Q |
8 |
agcttgccgttcaagttaaaccctagctacccacccagccaccgttccaaagttaattgagaaaggaaaaggataatttacgtcacatggttcttcattt |
107 |
Q |
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| T |
37935130 |
agcttgccgttcaagttaaaccctagctaccca----gccaccgttccaaagctaattgagaaaggaaaaggataatttacgtcacatggttcttcattt |
37935035 |
T |
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| Q |
108 |
gcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaacacaatcacagttcttcatgttacctgg |
190 |
Q |
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| T |
37935034 |
gcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaacataatcacagtacttcatgttacctgg |
37934952 |
T |
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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 845418 - 845313
Alignment:
| Q |
65 |
tgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaaca |
164 |
Q |
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| T |
845418 |
tgagaaaggacaaagataatttacgtcacagggttcttcaggagcatctttaggtatatcaagattgttctcaacatcctgaacctgaagcattgcaaca |
845319 |
T |
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| Q |
165 |
caatca |
170 |
Q |
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| T |
845318 |
caatca |
845313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 10455917 - 10455845
Alignment:
| Q |
63 |
attgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctc |
136 |
Q |
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| T |
10455917 |
attgagaaaggaaaaag-taatttacatcacacggttcttcatttgtatctttagttacatcaagactgttctc |
10455845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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