View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-2 (Length: 1035)
Name: NF4656-Insertion-2
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 181 - 813
Target Start/End: Original strand, 1020003 - 1020646
Alignment:
| Q |
181 |
gctctcaacttagtctc-ggaatttttaatgtttcaaaatagtcctcgaaattgaatatctcggatcatgttagtacttttaggtagttcaattagat-- |
277 |
Q |
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| T |
1020003 |
gctctcaacttagtctctggaatttttaatatttcaaaacagtcctcgaaattgaaaatctcggatcatgttagtacttttaggtagtccaatttgattc |
1020102 |
T |
|
| Q |
278 |
-------aatatcaggtttccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattccagtatgtgcatg |
370 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1020103 |
cattgctaatatcaggtttcaaatgtttaggattattggaattggtcatgggatgaattagttgcatatgatcttccagcaacattccagtatgtgcatg |
1020202 |
T |
|
| Q |
371 |
atcaaaccggacaaaaactacactatgttggtcactcgcaggtgatt-aattggtgaatttttgtaagttttcacctattcataaatataattcaatgtg |
469 |
Q |
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||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||| |||| |||||| |||||||||||| || |
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| T |
1020203 |
atcaaactggacaaaaactacactacgttggtcactcataggtgatttaattggttaatttttgtaagtttttacctcttcatatatataattcaatttg |
1020302 |
T |
|
| Q |
470 |
atgagtaatgaagattgttgaattcctttttgtagggaactttggttgcattggctgctttttccaaagatcaacagctagacaaattgagatcagctgc |
569 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |
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| T |
1020303 |
atgagtaatgaagatttttgaattcttttttgtagggaactttggttgcattggctgctttttccaaagatcaacaattggacaagttgagatcagctgc |
1020402 |
T |
|
| Q |
570 |
cttgctttgtccaattgcttatgttggtcagatgacctcaccagtggcgaaaaatgccgctgaccatttcattgcagaggtaacacttgttgataaatgc |
669 |
Q |
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| T |
1020403 |
cttgctttgtccaattgcttatgttggtcagatgacctcaccattaacaaaagatgctgctgaccatttcattgcagaggtaacacttgttgataaatgc |
1020502 |
T |
|
| Q |
670 |
attgtttctttttcaccaattgaaagaaaatagatatagttgttgttcaaaattcgaattttaacattgaaaatttgtatttcttcttaacagtcacttt |
769 |
Q |
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|||||||||||||||| |||||||| |||||||||||| ||||| |||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| | |
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| T |
1020503 |
attgtttctttttcacaaattgaaacaaaatagatataattgtttttcaaaattcaaatattaactttgaaaatttgtatttcttcttgacagtcactgt |
1020602 |
T |
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| Q |
770 |
acaaattgggaattttcgaatttagcattaaagagtaagtaatt |
813 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
1020603 |
acaaattgggaattttcgaatttagccttaaagggtaagtaatt |
1020646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 170 - 822
Target Start/End: Complemental strand, 36645806 - 36645148
Alignment:
| Q |
170 |
aattataggacgctctcaacttagtctc-ggaatttttaatgtttcaaaatagtcctcgaaattgaatat-ctcggatcatgttagtacttttaggtagt |
267 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||| | ||||||||| || |||||||||||||||||| ||||| |||| |
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| T |
36645806 |
aattataggacgctctcaacgtagtctctggaatgtttaatatttcaaaatagtctttgaaattgaaaattctcggatcatgttagtacgtttagatagt |
36645707 |
T |
|
| Q |
268 |
tcaattagat---------aatatcaggtttccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattcc |
358 |
Q |
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| T |
36645706 |
ccaatttgattccattgctaatatcaggtttccaatgtttaggattattggaattggtcatgggatgaattagtagcatatgatcttccagcaacattcc |
36645607 |
T |
|
| Q |
359 |
agtatgtgcatgatcaaaccggacaaaaactacactatgttggtcactcgcaggtgattaattggtgaatttttgtaagttttcacctattcataaatat |
458 |
Q |
| |
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||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||||| ||||| || |||| |||| |
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| T |
36645606 |
agtatgtgcatgatcaaactggacaaaaactgcattatgttggtcactcacaggtgattaattgctgaattttttcaagttctc-------catatatat |
36645514 |
T |
|
| Q |
459 |
aattcaatgtgatgagtaatgaagattgttgaattcctttttgtagggaactttggttgcattggctgctttttccaaagatcaacagctagacaaattg |
558 |
Q |
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| T |
36645513 |
aattcaatgtgataaagacttaagattgttgaattg--ttatgtagggaactttggttgcattagctgctttttccaaagatcaacaactggacaagttg |
36645416 |
T |
|
| Q |
559 |
agatcagctgccttgctttgtccaattgcttatgttggtcagatgacctcaccagtggcgaaaaatgccgctgaccatttcattgcagaggtaacacttg |
658 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36645415 |
agatcagctgccttgctttgtccaattgcttatgttggtcagatgacctcaccagtggcgaaaaatgccgccgaccatttcattgcagaggtaacacttg |
36645316 |
T |
|
| Q |
659 |
ttgataaatgcattgtttcttt-----ttcaccaattgaaagaaaatagatatagttgttgttcaaaattcgaattttaacattgaaaatttgtatttct |
753 |
Q |
| |
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| T |
36645315 |
ttgataaatgcattgtttttttttttcttcaccaaatgaaag-aaatagatataattattgttcaaaattcaaatattaacattcaaaatttgtatttct |
36645217 |
T |
|
| Q |
754 |
tcttaacagtcactttacaaattgggaattttcgaatttagcattaaagagtaagtaattcttattatc |
822 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36645216 |
tctttacagtcactgtacaaattgggaattttcgaatttagcattaaagagtaagtaattcttattatc |
36645148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 1019794 - 1019943
Alignment:
| Q |
12 |
ttacactataaacctttatattgtagaaaaaagcagtcaatgtggtcgaaattggagttgtagtgccattgtgaaaatctcaaaatgctttatgttttgg |
111 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| ||||||| |||||||||| ||||||||| ||| |
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| T |
1019794 |
ttacactacaaacctttatattgcggaaaaatgcagtcaatgtggtcaaaattgcagttgcggtgccgttgtgaagatctcaaaatcctttatgttgtgg |
1019893 |
T |
|
| Q |
112 |
ccgcaattacagttgcagaccacaatttaaaagaatatgttgctgcattt |
161 |
Q |
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| T |
1019894 |
ccgcaattgccgttgcagactacaatttaaaagaatatgttgctgcattt |
1019943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 36645988 - 36645855
Alignment:
| Q |
28 |
tatattgtagaaaaaagcagtcaatgtggtcgaaattggagttgtagtgccattgtgaaaatctcaaaatgctttatgttttggccgcaattacagttgc |
127 |
Q |
| |
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|||||||| |||||| |||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||| |||| ||||| |||||| | ||||| |
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| T |
36645988 |
tatattgtggaaaaatgcagtcaatgtggttgaaattggagttgcggtgccactgtgaagatctcaaaatgcttcatgtgttggctgcaattgccgttgc |
36645889 |
T |
|
| Q |
128 |
agaccacaatttaaaagaatatgttgctgcattt |
161 |
Q |
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| T |
36645888 |
agaccacaatttaaaatcatatgttgctgcattt |
36645855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 834 - 934
Target Start/End: Complemental strand, 36645119 - 36645023
Alignment:
| Q |
834 |
tttgtaattatcattcattaatttgcatatggttgagaagaatgctaccttattactgcttccttgtagctcagatttttggattttggattggctacag |
933 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |||||| |
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| T |
36645119 |
tttgtaatgatcattcattaatttgcatatggttaataagaatgctacc---ttactacttccttgtagctcaaatttttgga-tttggattgcctacag |
36645024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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