View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-3 (Length: 985)
Name: NF4656-Insertion-3
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 40854323 - 40854139
Alignment:
| Q |
8 |
acctgtactaattgaagtggctttcacatagttcttgatattgatctcaaaagcttcatgttcaagannnnnnnnnnnnagctacgcatgacacgnnnnn |
107 |
Q |
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| T |
40854323 |
acctatactaattaaagtggctttcacatagctcttgatattgatctcaaaa-catcatgttcaagattttcttttt--agctacgcatgacacgttttt |
40854227 |
T |
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| Q |
108 |
nnacattattgtttacggaattttacgtagtgacatgacaaatttggcatgagaaaaaacattgccatgtaattttagtagtttaaag |
195 |
Q |
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| T |
40854226 |
ttacattattgtttacggaattttacgtagtgacattacaaatttggcatgagaaaaaacattgccatgtaattttagtagtttaaag |
40854139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 264 - 431
Target Start/End: Complemental strand, 40854063 - 40853899
Alignment:
| Q |
264 |
gacttgtttttattttaaaaa-tgaaacgtgtactatcacaaccaaagctcgcagtgattagacggaaacnnnnnnnatgnnnnnnntaatgagtttgat |
362 |
Q |
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| T |
40854063 |
gacttgtttttattttaaaaaatgaaacgtgtactatcacaactacagctcgcagtgattagacggaaactttttatatgaaaaaattaatgattttgat |
40853964 |
T |
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| Q |
363 |
tgtgtttgtttaattttttgaaattaattagttagattgtaaaaaatatattttcgaattaaaactaac |
431 |
Q |
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| T |
40853963 |
tgtgtttgttaaattttttga----aattagttagattgtaaaaaaaatattttccaattaaaactaac |
40853899 |
T |
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