View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-4 (Length: 983)
Name: NF4656-Insertion-4
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 388 - 983
Target Start/End: Original strand, 34825948 - 34826528
Alignment:
| Q |
388 |
ctataacgtaacatgattgatgaggtgnnnnnnnatgtacgtaccctttgtctgagagacctgttagcctcacttagcatatgttcctacataagtgaca |
487 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34825948 |
ctataacataacatgattgatgaggtgtttttttatgtacgtaccctttgtctgagagacctgttagcctcacttagcatatgttcctacataagtaaca |
34826047 |
T |
|
| Q |
488 |
ttaattggtgagtaaaagcagactgctagaagatatcataaagtggaaaaggaaagaaaaattgctctcataccttgcgttgaagatcagagagctggtc |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826048 |
ttaattggtgagtaaaagcagactgctagaagatatcataaagtggaaaaggaaagaaaaattgctctcataccttgcgttgaagatcagagagctggtc |
34826147 |
T |
|
| Q |
588 |
cagcatgaattgggtctgtaaaggaaacaaatttacaaaataaaataacatatatatactgtattattaattgaagccagtaagttttgattccaatgaa |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826148 |
cagcatgaattgggtctgtaaaggaaacaaatttacaaaataaaataacatatatatactgtattattaattgaagccagtaagttttgattccaatgaa |
34826247 |
T |
|
| Q |
688 |
gaatgcaaataatcaacactttttgcttcatttgacaaatattagtatgttagtgg------tagtatatgctaatgttagacatatatattatttggtg |
781 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
34826248 |
gaatgcaaataatcaacactttttgcttcatatgacaaatattagtatgttagtggtagtaatagtatatgctaatgttattcatatatatta-ttggtg |
34826346 |
T |
|
| Q |
782 |
gagatagaacccttaacctcatttatcattcaacttcttatcattattacagattaaactaatgaagggatagtttagtttcaattagcagtggcttctt |
881 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34826347 |
gagatagaacccttaacctcat---------------ttatcattattacagattaaactaatgaa-ggatagtttagtttcaattagcagtggcttctt |
34826430 |
T |
|
| Q |
882 |
cttgttgtcattagtgactctttggattccaatttgttttgccaccaatattccaatctgttttcaaagaactttccaacaatggtcgccaggttgacac |
981 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
34826431 |
cttgttgtcattagtgactctttggattccaatttgttttgccacc---attccaatctgttttcaaagaacttt-caacaatggtcgccatgttgacac |
34826526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 34825551 - 34825918
Alignment:
| Q |
8 |
atttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaagatatcaataatgcctaaaagaaatacacat---- |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825551 |
atttaagcttgcatgtcaagcaacaatagtactaatcatatttgcagcacacatgctattcctaagatatcaataatgcctaaaagaaatacacatcatg |
34825650 |
T |
|
| Q |
104 |
-------------agtagatgtgagtgtgaccaaaacattatcaagcatgatcaatgattgagcctagaaaaagtgcatacccaatttgtaaagttggct |
190 |
Q |
| |
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| T |
34825651 |
atgtttgcaacatagtagatgtgagtgtgaccaaaacattatcaaccatgatcaatgattgagcctagaaaaagtgcatacccaatttgtaaagttggct |
34825750 |
T |
|
| Q |
191 |
cacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccatagcccatttcttcaacacatgcattcatttggagttgattcaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825751 |
cacactccaactgttgatagagaccatcaccctgagtttgacttggatgccgaccatagcccatttcttcaacacatgcattcatttggagttgattcaa |
34825850 |
T |
|
| Q |
291 |
ttgatacccttccagctgctaaataacaaacagagtcacttactgattttcaatatgacaatatcatg |
358 |
Q |
| |
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| T |
34825851 |
ttgatacccttccagctgctaaataacaaacagagtcacttactgattttcaatatgacaatatcatg |
34825918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 432 - 673
Target Start/End: Original strand, 9661238 - 9661481
Alignment:
| Q |
432 |
cctttgtctgagagacctgttagcctcacttagcatatgttcctacataagtgacattaattggtgagtaaaagcagactgctagaa---gatatcataa |
528 |
Q |
| |
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||||||||| |||||| |||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||| |||||||||| ||||||||| |
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| T |
9661238 |
cctttgtctaagagacttgttagcctcgcttagcatatgttcctacacaagtaac--taattggtgagtaaaagcaaactgctagaataagatatcatac |
9661335 |
T |
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| Q |
529 |
agtggaaaaggaaagaaaaattgct-ctcataccttgcgttgaagatcagagagctggtccagcatgaattgggtctgtaaaggaaacaaatttacaaaa |
627 |
Q |
| |
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||||||||||||||| || || |||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9661336 |
agtggaaaaggaaagttttttttcttctcatagcttgcgttgaagatcagagagatgatccagcacgaattgggtctgtaaaggaaacaaatttacaaaa |
9661435 |
T |
|
| Q |
628 |
taaaataacatatatatactgtattattaattgaagccagtaagtt |
673 |
Q |
| |
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||||||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
9661436 |
taaaatagcatatatatactctattagtaattgaagccagtaagtt |
9661481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 429 - 699
Target Start/End: Complemental strand, 6843765 - 6843513
Alignment:
| Q |
429 |
taccctttgtctgagagacctgttagcctcacttagcatatgttcctacataagtgacattaattggtgagtaaaagcagactgctagaagatatcataa |
528 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| || ||||||||| || | ||||||||||| |
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| T |
6843765 |
taccctttgtctgagagacttgttagcctcgcttagcatatgttcctacacaagtaac--taattggtg----------gaat-----aagatatcatac |
6843683 |
T |
|
| Q |
529 |
agtggaaaaggaaagaaaaattgctctcataccttgcgttgaagatcagagagctggtccagcatgaattgggtctgtaaaggaaacaaatttacaaaat |
628 |
Q |
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| T |
6843682 |
aatggaaaaggaaagaatttttt-tctcatagcttgcgttgaagatcagagagatgatccagcacgaattgggtctgtaaaggaaacaaatttacaaaat |
6843584 |
T |
|
| Q |
629 |
aaaataacatatatatactgtattattaattgaagccagtaagttttgattccaatgaagaatgcaaataa |
699 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||| |
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| T |
6843583 |
aaaatagcatatatatactctattattaattgaagccagtaaattttgcttccaatgaggaatgcaaataa |
6843513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 714 - 914
Target Start/End: Complemental strand, 6843477 - 6843293
Alignment:
| Q |
714 |
ttcatttgacaaatattagtatgttagtggtagtatatgctaatgttagacatatatattatttggtggagatagaacccttaacctcatttatcattca |
813 |
Q |
| |
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| T |
6843477 |
ttcatatgacaaatattagtatgttggtggtagtatatgctaatgttagtcatgtatattgtt-ggtggagatagaatccttaacctc------------ |
6843391 |
T |
|
| Q |
814 |
acttcttatcattattacagattaaactaatgaagggatagtttagtttcaattagcagtggcttcttcttg--ttgtcattagtgactctttggattcc |
911 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
6843390 |
----cttatcattattacagattaaactaatgaa-ggatacttcagtttcaattagcagtggcgtcttcttgttttgtcattagtaactctctggattcc |
6843296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 714 - 983
Target Start/End: Original strand, 9661518 - 9661766
Alignment:
| Q |
714 |
ttcatttgacaaatattagtatgttagtggtagtatatgctaatgttagacatatatattatttggtggagatagaacccttaacctcatttatcattca |
813 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||||||||||||| ||| |||||| | ||||||||||||| |||||||||| |
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| T |
9661518 |
ttcatatgacaaatattagtttgttggtggtagtatatgctaatgttagtcatgtatattgta-ggtggagatagaatccttaacctc------------ |
9661604 |
T |
|
| Q |
814 |
acttcttatcattattacagattaaactaatgaagggatagtttagtttcaattagcagtggcttcttcttg--ttgtcattagtgactctttggattcc |
911 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
9661605 |
----cttatcattattacagattaaactaatgaa-ggatacttcaatttcaattagcagtggcttcttcttgttttgtcattagtaactctctggattcc |
9661699 |
T |
|
| Q |
912 |
aatttgttttgccaccaatattccaatctgttttcaaagaactttccaacaatggtcgccaggttgacacct |
983 |
Q |
| |
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||| |||||| | || ||||||||||||| ||||||||| |||||||||| |||| ||||| |||| |
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| T |
9661700 |
aatctgtttt----tcgcgatcccaatctgttttcgaagaacttt-caacaatggttgccatgttgatacct |
9661766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 604
Target Start/End: Complemental strand, 38399739 - 38399690
Alignment:
| Q |
555 |
tcataccttgcgttgaagatcagagagctggtccagcatgaattgggtct |
604 |
Q |
| |
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||||||||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
38399739 |
tcataccttacgttgaagatcacctagctgatccagcatgaattgggtct |
38399690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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