View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-5 (Length: 934)
Name: NF4656-Insertion-5
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-5 |
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| [»] scaffold1829 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 7 - 931
Target Start/End: Original strand, 30371557 - 30372488
Alignment:
| Q |
7 |
agtaggttcctgtgaatattaatgaagcatccttttcattatttttagtttgaactaagttcaaaaataattaatcagtagtacagtnnnnnnnnnncat |
106 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30371557 |
agtaggttcttgtgaatattaatgaagcatcctttttattatttttagtttgaactaagttcaaaaataattaatcagtagtacagtaaaaaaaa--cat |
30371654 |
T |
|
| Q |
107 |
caaattactattcacaaattaagcactataaaaaccaacagg-acgcgtcatgcgtcgtctgcacaccagtaattaataaaaaccatgaatatccataaa |
205 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30371655 |
caaattactactcacaaattaagcactataaaaaccaacagggacgcgtcatgcgtcgtctgcacaccagtaattaataaaaaccatgaatatccataaa |
30371754 |
T |
|
| Q |
206 |
tatttgtgacgagaataaaagaaaaaagcttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| || |
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|
| T |
30371755 |
tatttgtgacgagaataaaagaaaaaagcttgcctcagctttagatataggtattttgataatacgccttaacaataacaaccgacaatgggtaacgttg |
30371854 |
T |
|
| Q |
306 |
gctcta----------ttttgatccccttatttcttgttttcaatccacgatttttccccctacattttatgttnnnnnnnttagattagggaagccacc |
395 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30371855 |
gctctgatgatacaacttttgattcctatatttcttgttttcaatccacgatttttccccctacattttatgttaaaaaa-ttagattagggaagccacc |
30371953 |
T |
|
| Q |
396 |
ctacttttggccctcttattttattttagattgacaccaaagccactgtctcaaccattagaacgagtaaaactatgagctgctccttataaaaggcgat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
30371954 |
ctacttttggccctcttattttattttagattgacaccaaagccactgtctcaaccattagaacgagtaaaactatgagctgctccttataaaaggcaat |
30372053 |
T |
|
| Q |
496 |
gtcttcctgaaattgatgcatttaacaatatggcatttagacctgaacccgatgcatctcacgatatggccttgataaattcaaaataatgctgaagtat |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30372054 |
gtcttcctgaaattgatgcatttaacaatatggcatttagacctgaacccagtgcatctcacgatatggccttgataaattcaaaataatgctgaagtat |
30372153 |
T |
|
| Q |
596 |
aagactgattatagagcatacaatcattgttcacctccaatattaccaataaaatcatatcattaatcatttctaactgtttctgctaacaatggtatat |
695 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
30372154 |
aagcctgattatagagcatacaatcattgttcacctccaatattacccataaaatcatatcattaaccatttctaactgtttctgctaacaatggtatat |
30372253 |
T |
|
| Q |
696 |
tggcgcccacaattaaattactaaataactttcatcttctattacagacgaaatcaatcaaatttggaataggattgccttaatgaaaaacaaaacagct |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30372254 |
tggcgcccacaattaaattactaaataactttcatcttctattacagacgaaatcaatcaaatttggaataggattgccttaatgaaaaacaaaacagct |
30372353 |
T |
|
| Q |
796 |
atatttaatttatctatcatccatctatagcagtcagtaacaaccaaaaagaaaaataatcatacaaaatttggcttggaaagtaggaaaactcatcact |
895 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30372354 |
atatttaatttatctatcatccatctatagcagtcagtaacaacc-aaaagaaaaataaacatacaaaatttggcttggaaagtaggaaaactcatcact |
30372452 |
T |
|
| Q |
896 |
gaaattgtgcaccaacctattttcagttatttcctt |
931 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
30372453 |
gaaattgtgcaccaacctattttcagttatttcctt |
30372488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 532 - 672
Target Start/End: Original strand, 26515713 - 26515852
Alignment:
| Q |
532 |
ttagacctgaacccgatgcatctcacgatatggccttgataaattcaaaataatgctgaagtataagactgattatagagcatacaatcattgttcacct |
631 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||| ||||||| |||| ||||| ||||||||| ||||||| ||||||| ||||||||| |||| | |
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| T |
26515713 |
ttagacctgaactcgatgcatttcacgatattgccttagtaaattccaaattatgctaaagtataagcctgattaaagagcatgcaatcattgatcactt |
26515812 |
T |
|
| Q |
632 |
ccaatattaccaataaaatcatatcattaatcatttctaac |
672 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||| |
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| T |
26515813 |
ccaa-attacccataaaatcatatgattaatcatttctaac |
26515852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 18187887 - 18187812
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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| T |
18187887 |
ttgccacagctttagatataggtattttgaaaatacgccttaacaataacaaccgacaatgggtaacgatggctct |
18187812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 860 - 927
Target Start/End: Original strand, 26515993 - 26516060
Alignment:
| Q |
860 |
caaaatttggcttggaaagtaggaaaactcatcactgaaattgtgcaccaacctattttcagttattt |
927 |
Q |
| |
|
|||| ||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26515993 |
caaagtttagcttggaaagtaagacaactcatcactgaaattgcgcaccaacctattttcagttattt |
26516060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 12334533 - 12334458
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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| T |
12334533 |
ttgccacagctttagatataggtattttgaaaatacgccttaacaataacaaccgacaatgggtaacgatggctct |
12334458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 6950202 - 6950277
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
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|
| T |
6950202 |
ttgccacagctttagatataggtattttgaaaatacgccttaacaataacaaccaacaatgggtaacgatggctct |
6950277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 12338720 - 12338645
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||| |
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| T |
12338720 |
ttgccacaactttagatataggtattttgaaaatacgccttaacaataacaaccgagaatgggtaatgatggctct |
12338645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 39506351 - 39506426
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
39506351 |
ttgccacagctttagatataggtattttgaaaatacgccttaacaataacaaccgacaatgggtaacgatggctct |
39506426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 13241042 - 13241117
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
13241042 |
ttgccacagctttagatataggtattttgaaaatacgccttaacaataacaaccgacaatgggtaacgatggctct |
13241117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 42800521 - 42800596
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaacaataacaactgacaatgggtaacaatggctct |
310 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
42800521 |
ttgccacaactttagatattggtattttgaaaatacgccttaacaataacaaccgacaatgggtaacgatggctct |
42800596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1829 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1829
Description:
Target: scaffold1829; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 864 - 907
Alignment:
| Q |
235 |
ttgccacagctttagatataggtattttgaaaatacgtcttaac |
278 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||| |
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|
| T |
864 |
ttgccacagctgtagatataggtattttgagaatacgccttaac |
907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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