View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-6 (Length: 910)
Name: NF4656-Insertion-6
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 288 - 722
Target Start/End: Original strand, 15462618 - 15463056
Alignment:
| Q |
288 |
tatagttttaatgtgaatgacaatgaaacaaaataagatttccctttcatattgattatnnnnnnnttatcaatatttagcttggactagtttagagttt |
387 |
Q |
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| T |
15462618 |
tatagttttaatgtcaatgacaatgaaacaaaataagatttccctttcatattgattataaaaaaattatcaatatttagtttggactagtttagagttt |
15462717 |
T |
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| Q |
388 |
atcaaaatcactctaatattaatgattttgttgaagttacnnnnnnntaacgaatcattagagtttatcaactgagttatgtttatgggactactt---a |
484 |
Q |
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| T |
15462718 |
atcaaaatcactctaatattaatgattttgttgaagttacaaaaaaataacgaatcattagagtttatcaactgagttatgtttatgggacgacttctta |
15462817 |
T |
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| Q |
485 |
ttttaatagagcataatttttatgaatgatgaagtaattggaa--gggggatatttgtgaggtaaaatatgtggggctgtaaatggctaattggttagtg |
582 |
Q |
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| T |
15462818 |
ttttaatagagcata-tttttatgaatgatagagtaattggcaaggggggatatttgtgaggtgaaatatgtggggctgtaaatggctaattggttagtg |
15462916 |
T |
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| Q |
583 |
aaaatggtgtatcactggataggtgtttgtgcttttgnnnnnnnnaaatgccaaacattttggaacttacgccacatgagcagtatata---atgtccat |
679 |
Q |
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| T |
15462917 |
aaaatggtgtatcactggata-gtgtttgtgcttttgtttctttt-aatgcc-aacattttggaacttacgccacatgagcagtatatatgtccgtccat |
15463013 |
T |
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| Q |
680 |
tctcaaattatttcaatgaattttgacaagaatagggcgataa |
722 |
Q |
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| T |
15463014 |
tctcaaattatttcaatgaattttgacaagaatagggcgataa |
15463056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 15462353 - 15462487
Alignment:
| Q |
8 |
gttatgccttaacaaatctttggctttcatcactgaatcaatgaggtagcattcctttttcaacactgtgcnnnnnnngtttatttattttatctaacat |
107 |
Q |
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| T |
15462353 |
gttatgccttaacaaatctttggctttcatcactgaatcaatgaggtagcattcctttttcaacactgtgctttttttgtttatttattttatctaacat |
15462452 |
T |
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| Q |
108 |
tctctctcttaccaaatgcttcgtacacagaccaa |
142 |
Q |
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| T |
15462453 |
tctctctcttaccaaatgcttcgtacacagaccaa |
15462487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 769 - 910
Target Start/End: Original strand, 15463167 - 15463300
Alignment:
| Q |
769 |
atagtttatagttggaggagggaaattttagagcttcaaaaataatttaagcagttagaaatatgcctaattttatggttcaaaagattaccatgcatct |
868 |
Q |
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| T |
15463167 |
atagtttatagttgaag-agggaaatta-agagcttcaaaa-taatt-aagcagttagaa-tatgcataattttatg-ttcaaaagattaccatacatct |
15463260 |
T |
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| Q |
869 |
gccgtgcacccatatttaaccacaaaaacaaacgaaagaatt |
910 |
Q |
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| T |
15463261 |
gca-tgcactcatatttaac-acaaaaacaaacgaaagaatt |
15463300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 15462562 - 15462603
Alignment:
| Q |
216 |
acttaaattggaatgttgctactgcaacatgtctctttaggg |
257 |
Q |
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| T |
15462562 |
acttaaattggaatgttgctactgcaacatgtctctttaggg |
15462603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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