View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-7 (Length: 806)
Name: NF4656-Insertion-7
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 51296421 - 51296894
Alignment:
| Q |
8 |
caaaagagagtcaagaacttgtatcttgacatggtcaactagaaatcttaataacgggccgggaggggcaatacaaatgaggtgtagtgtgagtgccaaa |
107 |
Q |
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| T |
51296421 |
caaaagagagtcaagaacttgtatcttgacatggtcaactagaaatcttaataacggg-----aggggcaatacaaatgtggtgtagtgtgagtgccaaa |
51296515 |
T |
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| Q |
108 |
cattactgttacatgcataaaagaagtgtgaattcttgactcactttggaaaccattggtaaaggttgaatggaatcatcaataaatgtacattagaatg |
207 |
Q |
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| T |
51296516 |
cattactgttacatgcataaaagaagtgtgaattcttgactcactttggaaaccattggtaaaggttgaatggaatcatcaataaatgtacattagaatg |
51296615 |
T |
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| Q |
208 |
acaaggtagtgaggtaccattttaaattggaatatcattcctgcagcatcttgtacaagaaccaatgtttatcctttgaatcgcatggcttctaagtagc |
307 |
Q |
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| T |
51296616 |
agaaggt--------accattttaaattggaatatcattcctgcagcatcttgtacaagaaccaatgtttatcctttgaatcgcatggcttctaagtagc |
51296707 |
T |
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| Q |
308 |
acaaagctactttcagtgtcgggaataacacacaattatatttgtcacttcttggttcttcttacatcatttcacccaaaattttatgctatatgtttgg |
407 |
Q |
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| T |
51296708 |
acaaagctactttcagtgtcgggaataacactcaattatatttgtcacttcttggttcttcttacatcatttcacccaaaattttatgctatatgtttgg |
51296807 |
T |
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| Q |
408 |
taaactataatacatgtaaccaacaattcactttttctccacatggaatgaatttttactacttttattggaaatttcttagaggtg |
494 |
Q |
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| T |
51296808 |
taaactatagtacatataaccaacaattcactttttccccacatggaatgaatttttactacttttattggaaatttcttagaggtg |
51296894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 517 - 675
Target Start/End: Original strand, 51297218 - 51297377
Alignment:
| Q |
517 |
gatgcaattagtcgatcaccgtctgatgatgatcatgtgattgattactggaaggatacactttggtatgttggtggcacaatgtcttagtgtgtgcctg |
616 |
Q |
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| T |
51297218 |
gatgcaattagtcgatcaccgtctgatgatgatcatgtgattgattactggaaggatacactttggtatgttggcggcacaacgtcttagtgtgtgcctg |
51297317 |
T |
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| Q |
617 |
tttatcgataataaatagcaaggttgc-ttttttcttatgcttgactttgaatgcaatcc |
675 |
Q |
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| T |
51297318 |
tttatcgataataaatagcaaggttgctttttttcttatgcttgactttgaatgcaatcc |
51297377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 673 - 800
Target Start/End: Original strand, 51297405 - 51297527
Alignment:
| Q |
673 |
tccttttgaaaaggataatgcatcaaagtcattatttatcgatatttatttttgtgcgccttacattacattgcttgtattcgttagtaatttgaatgaa |
772 |
Q |
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| T |
51297405 |
tccttttgaaaaggataatgcatcaaagtcattatttatctatatttacttttgtgcgccttacatt-----gtttgtatccgttagtaatttgaatgaa |
51297499 |
T |
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| Q |
773 |
aggggtcttactaatcggtataaacaat |
800 |
Q |
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| T |
51297500 |
aagggtcttactaatcggtataaacaat |
51297527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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