View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656-Insertion-8 (Length: 708)
Name: NF4656-Insertion-8
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656-Insertion-8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Complemental strand, 36510351 - 36509651
Alignment:
| Q |
8 |
tttggatcattagatgaactagaaagtgatgattgacttgcaacaactgcattctgcttaaactcttgtagcctctgatggatcaaatgaacgctaggtt |
107 |
Q |
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| T |
36510351 |
tttggatcattagatgaactagaaaatgatgattgacttgcaacaactgcattctgcttaaactcttgtagcctctgatggatcaaatgaacgctaggtt |
36510252 |
T |
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| Q |
108 |
gagcgtttacattgagtaatccacaagagggaaacattgaaatgaaattctttgaaggcaaccacttgaactttccagttttcatagttgaattggagtg |
207 |
Q |
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| T |
36510251 |
gagcgtttacattgagtaatccacaagaaggaaacattgaaatgaaattctttgaaggcaaccacttgaactttccagttttcatagttgaattggagtg |
36510152 |
T |
|
| Q |
208 |
tgtttgcatgtgtggaagattaaggtatgcatctggtccatagagtctccttgcagcctcatcataagccatggcagcttcttcagccgtggcaaaagaa |
307 |
Q |
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| T |
36510151 |
tgtttgcatgtgtggaagattaaggtatgcatctggtccatagagtctccttgcagcctcatcataagccatggcagcttcttcagccgtggcaaaagaa |
36510052 |
T |
|
| Q |
308 |
ccaagccagagtctggttcttttctttggctctcttatctcagcaacccatttcccccatgttctttgacgaacacctcgatactcacacgaagcatttt |
407 |
Q |
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| T |
36510051 |
ccaagccagagtctggttcttttctttggctctcttatctcagcaacccatttcccccatgttctttgacgaacacctcgatactcacacgaagcatttt |
36509952 |
T |
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| Q |
408 |
gagggccacctttgcctctggttggccctttcttccatggtttcaagggggatttcttggaattatccatcatgtatattgaggatatagtagaacagaa |
507 |
Q |
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| T |
36509951 |
gagggccacctttgcctctggttggccctttcttccatggtttcaagggggatttcttggaattatccatcatgtatattgaggatatagtagaacagaa |
36509852 |
T |
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| Q |
508 |
caagtgaaagtggtagtggtgtgtgtgtattatcagtggtgagtgatacttggaactgcatgttataggagcgggatatgtagaagcaaagggtggaggt |
607 |
Q |
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| T |
36509851 |
caagtgaaagtagtagtggtgtgtgtgtattatcagtggtgagtgatacttggaactgcatgttataggagcgggatatgtagaagcaaagggtggaggt |
36509752 |
T |
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| Q |
608 |
tggtgtaaatgttttcacgtttggagaagtggctaaatccatgtgaccgttactcagtacatacattcttcaaaatcgtgtttttcttttcttcattttc |
707 |
Q |
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| T |
36509751 |
tggtgtaaatgttttcacgtttggagaagtagctaaatccatgtgaccgttactcagtacatacattcttcaaaatcgtgtttttcttttcttcattttc |
36509652 |
T |
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| Q |
708 |
a |
708 |
Q |
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| T |
36509651 |
a |
36509651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 25986050 - 25985952
Alignment:
| Q |
268 |
atcataagccatggcagcttcttcagccgtggcaaaagaaccaagccagagtctggttcttttctttggctctcttatctcagcaacccatttccccca |
366 |
Q |
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| T |
25986050 |
atcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaacccattttcccca |
25985952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 35978468 - 35978592
Alignment:
| Q |
268 |
atcataagccatggcagcttcttcagccgtggcaaaagaaccaagccagagtctggttcttttctttggctctcttatctcagcaacccatttcccccat |
367 |
Q |
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| T |
35978468 |
atcataagcaagagcagcttcttgagccgtcggaaaagtacctaaccaaagtctacttcctctatttggttccctaatctcagcaacccatttcccccaa |
35978567 |
T |
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| Q |
368 |
gttctttgacgaacacctcgatact |
392 |
Q |
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| T |
35978568 |
gtcctctgtctaacacctcgatact |
35978592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 33470024 - 33469926
Alignment:
| Q |
268 |
atcataagccatggcagcttcttcagccgtggcaaaagaaccaagccagagtctggttcttttctttggctctcttatctcagcaacccatttccccca |
366 |
Q |
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||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||| |||| ||||| || ||||||||||||||||||||| ||||| |
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| T |
33470024 |
atcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcagcaacccattttcccca |
33469926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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