View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656_high_6 (Length: 280)
Name: NF4656_high_6
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 128 - 270
Target Start/End: Original strand, 53175165 - 53175307
Alignment:
| Q |
128 |
caaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttcataagagaaacatttccaagttggtctttgacaagtttcttcttc |
227 |
Q |
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| T |
53175165 |
caaacaagtcttaatcacctgagttgaagccattggtagcatcaaacaactcttcataagagaaacatttccatgttggtttttgacaagtttcttcttc |
53175264 |
T |
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| Q |
228 |
atatggaagaatcttcaagctcttttcattttcttcacctttg |
270 |
Q |
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| T |
53175265 |
atatggaagaatcttcaagctcttttcattttcttcacctttg |
53175307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 53175032 - 53175081
Alignment:
| Q |
1 |
atgttcccttgtaaacctcagcataaccaccttttccaaccatattttct |
50 |
Q |
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| T |
53175032 |
atgttcccttgtaaacctcagcataaccaccttttccaaccatattttct |
53175081 |
T |
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