View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656_low_5 (Length: 288)
Name: NF4656_low_5
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 31452544 - 31452273
Alignment:
| Q |
7 |
agaataaatcaatattctctaattgattgaatctttgtgtataaataggcattcatatattcataataaaatcatagcatggcttgtgtaggagaaggcc |
106 |
Q |
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| T |
31452544 |
agaataaatcaatattctctaattgattgaatctttgtgtataaataggcattcatat--tcataataaaatcatagcatggcttgtgtaggagaaggcc |
31452447 |
T |
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| Q |
107 |
ttcagtaaccctcaaaggcttccatggaatcacatgttatggttagattaatcatatctttgaccagtgatgtgaaaaaatcgtgggatccgttgatggg |
206 |
Q |
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| T |
31452446 |
ttcagtaaccctcaaaggcttccatggaatcacatgttatggttagattaatcataactttgaccagtgatgtgaaaaaatcgtgggatccgttgatggg |
31452347 |
T |
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| Q |
207 |
ttactgaaagctttgatccttaattatgtctagcattcattttggagaaatgaaatcagtgtgagagtataatt |
280 |
Q |
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| T |
31452346 |
ttactgaaagctttgatccttaattatgtctagcattcattttggagaaatgaaatcagtgtgagagtataatt |
31452273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 31428457 - 31428282
Alignment:
| Q |
73 |
taaaatcatagcatggcttgtgtaggagaaggccttcagtaaccctcaaaggcttccatggaatca---catg--ttatggttagattaatcatatcttt |
167 |
Q |
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| T |
31428457 |
taaaatcatagcatggcttat--aggagaaggccttcagtaaccctcaaaggcttccatggaatcatagcatggcttacggtcagattaatcatatattt |
31428360 |
T |
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| Q |
168 |
gac--cagtgatgtgaaaaaatcgtgggatcc-gttgatgggttactgaaagctttgatccttaattatgtctagcattc |
244 |
Q |
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| T |
31428359 |
gactatagtgatgtg--aaaatcatgggatcctgttggtgggttactgaaagctttgatccttaattatgtcttgcattc |
31428282 |
T |
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