View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4656_low_8 (Length: 216)
Name: NF4656_low_8
Description: NF4656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4656_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 51824590 - 51824399
Alignment:
| Q |
13 |
caaagatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
112 |
Q |
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| T |
51824590 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
51824491 |
T |
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| Q |
113 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttatttactttgcatatttcctgagtgatg |
204 |
Q |
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| T |
51824490 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggttggcctcttgttatttactttgcatatttcctgagtgatg |
51824399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 51827720 - 51827644
Alignment:
| Q |
105 |
atgtcattttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttattta |
181 |
Q |
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||||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |||||||||||||||||| |
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| T |
51827720 |
atgtcattttcttagtattaaaaatcttaatctagattctagttcattgtgcaaattgatttgcctcttgttattta |
51827644 |
T |
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