View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657-Insertion-10 (Length: 327)

Name: NF4657-Insertion-10
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657-Insertion-10
NF4657-Insertion-10
[»] chr1 (1 HSPs)
chr1 (45-327)||(8334050-8334327)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 45 - 327
Target Start/End: Complemental strand, 8334327 - 8334050
Alignment:
Q  45 tatgtggcttaagctggggatgaattgattccttaatgataatgataattaatggattttacatgtcttaaatcaggcttaagatgaggattttccctcc 144  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8334327 tatgtggcttaagctggggatgaattgattccttaatgattatgataattaatggattttacatgtcttaaatcaggcttaagatgaggattttccctcc 8334228  T
Q  145 taatttattggagaccctagtttgagagttaagacacttcaaagggttgaaaatcatcatttccttttaactcaccaagatttgatgagaacctcctcta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  8334227 taatttattggagaccctagtttgagagttaagacacttcaaagggttgaaaatcatcatttccttttaacccacgaagatttgatgagaacctcctcta 8334128  T
Q  245 atggaatttttgttttctaacacgtgaaccaccccaccactcacagaatcttcatcgataatggaaatataaatattaattaa 327  Q
    |||||||||||||||||||||||||||||     ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8334127 atggaatttttgttttctaacacgtgaac-----caccactaacagaatcttcatcgataatggaaatataaatattaattaa 8334050  T

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