View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-14 (Length: 435)
Name: NF4657-Insertion-14
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 435
Target Start/End: Original strand, 38292797 - 38293225
Alignment:
| Q |
7 |
accatgatcatttgttttttctgtatccatcattactcctagtagatcatctccataagagcaatctgattgagaattttgcaacctactttctataatg |
106 |
Q |
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| T |
38292797 |
accatgatcatttgttttttctgtatccatcattactcctagtagatcatctccataagagcaatctgattgagaattttgcaacctactttctataatg |
38292896 |
T |
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| Q |
107 |
cattgtagtgatttcttcatttttctatcaagcttccatatctcgatattcgacttagtaggaaaatatctgcagcattaagaatccaaaaccatagaaa |
206 |
Q |
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| T |
38292897 |
cattgtagtgatttcttcatttttctatcaagcttccatatctcaatatttgacttagtaggaaaatatctgcagcattaagaatccaaaaccatagaaa |
38292996 |
T |
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| Q |
207 |
ataattaatatatgtactgatcaatgcagaaccaaatgaatttagagtaagagaggttaattaatatactgagtgccgggaatgaaaacgtcagaatttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
38292997 |
ataattaatatatgtactgatcaatgcagaaccaaatgaatttagagtaagagaggttaattaatatactgagtgccaggaatgaaaacgtcggaatttg |
38293096 |
T |
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| Q |
307 |
aagctacgcagtgcttatgaagctgtgtttgtgcatcaaaagcttctcttccatgaacaaagctggtaccaaaggcagtgtgggcaattatatttgctgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38293097 |
aagctacgcagtgcttatgaagctgtgtttgtgcatcaaaagcttctcttccatgaacaaagctggtaccaaaggcagtgtgggcaattatatttgctgt |
38293196 |
T |
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| Q |
407 |
tagctctcgaaattcttcagtcatctcta |
435 |
Q |
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| T |
38293197 |
tagctctcgaaattcttcagtcatctcta |
38293225 |
T |
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