View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-16 (Length: 270)
Name: NF4657-Insertion-16
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-16 |
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| [»] chr4 (3 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 45734864 - 45734602
Alignment:
| Q |
8 |
acgagctgatgaagccatttcgtgagcatctgtgtgtcagttttaattcaagttagatggttttaactcaaattagagattaaaacatggttagaaagct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734864 |
acgagctgatgaagccatttcgtgagcatctgtgtgttagttttaattcaagttagatggttttaactcaaattagagattaaaacatggttagaaagct |
45734765 |
T |
|
| Q |
108 |
ggttacaagtttgttagatgacttatagctattagttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734764 |
ggttacaagtttgttagatgacttatagctattagttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatata |
45734665 |
T |
|
| Q |
208 |
agcatgttgtaaatagtttttcaaagcttaatgagaatacagttttacaacaatcaattactc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45734664 |
agcatgttgtaaatagtttttcaaagcttaatgagaatacagttttacaacaatcaattactc |
45734602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 2462980 - 2462859
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag |
142 |
Q |
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||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||| | ||||||||||||| |||||||| | |||||||| |
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| T |
2462980 |
agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgact--tggctattag |
2462884 |
T |
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| Q |
143 |
ttagcaaattagttaagtttgtttt |
167 |
Q |
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||||||| |||||||| |||||||| |
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| T |
2462883 |
ttagcaagttagttaattttgtttt |
2462859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 2485780 - 2485659
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag |
142 |
Q |
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||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||| | ||||||||||||| |||||||| | |||||||| |
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| T |
2485780 |
agttttaattcaagttagatggttt-aactcaatttaattaagagtaaaacatggttagaaagtttgttacaagtttgtaagatgact--tggctattag |
2485684 |
T |
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| Q |
143 |
ttagcaaattagttaagtttgtttt |
167 |
Q |
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||||||| |||||||| |||||||| |
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| T |
2485683 |
ttagcaagttagttaattttgtttt |
2485659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 3079849 - 3079666
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| | |||||||||| ||||||||||||| |||| ||| |
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| T |
3079849 |
agttttaattcaagttagatggttttaactcaagttagttaagagtaaaacatggttagaaagtttgttacaagttagttagatgactta--gctactag |
3079752 |
T |
|
| Q |
143 |
ttagcaaattagttaagtttgttt-tgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttt |
227 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||| |||| ||||||| |
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| T |
3079751 |
ttagcaaattagttaagtttgtttgtgattgcttactaagctagtcatgtgaataagctctatataagcatgtcgtaactagtttt |
3079666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 1730860 - 1730744
Alignment:
| Q |
111 |
tacaagtttgttagatgacttatagctattagttagcaaattagttaagtttgttttg--attgcttactaagcaagttatgtaaataagctctatataa |
208 |
Q |
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|||||||| ||||||||||||| |||| |||||||||| ||||||||||| ||||| ||||||| |||||||||| |||| ||||||||||| |||| |
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| T |
1730860 |
tacaagttagttagatgactta--gctactagttagcaagttagttaagttagttttctcattgcttgctaagcaagtcatgtgaataagctctagataa |
1730763 |
T |
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| Q |
209 |
gcatgttgtaaatagtttt |
227 |
Q |
| |
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||||||||||| ||||||| |
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| T |
1730762 |
gcatgttgtaactagtttt |
1730744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 15567042 - 15566851
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaattag---agattaaaacatggttagaaagctggttacaagtttgttagatgacttatagctattag |
142 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
15567042 |
agttttaattcaagttaaatggttttaactcaagttagttgagattaaaacatggttagaaagttggttaaaagtttgttagatgact--tagctattag |
15566945 |
T |
|
| Q |
143 |
ttagcaaattagttaagtttgttttgattgcttactaagcaagttatgtaaataagctc--tatataagcatgttgtaaatagtttttcaaagcttaatg |
240 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||| |
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| T |
15566944 |
ttaacaaattagttaagtttgttttgatt-----------aagttatgtaaataagctctatatataagcatgttgtaaatagtttttaaaggtttaatg |
15566856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 15565089 - 15565000
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttagaaagctggttacaagtttgttagatgactta |
132 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
15565089 |
agttttaattcaagttagatggttttaactcaagttacttgagattaaaacatggttagaaagttggttacaagttttttagatgactta |
15565000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 8855218 - 8855155
Alignment:
| Q |
159 |
gtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaata |
222 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
8855218 |
gtttgttttgatttcttactaagcaagctatataaataagctctatataagcatgttgtaaata |
8855155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 8855279 - 8855220
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaatta---gagattaaaacatggttaga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
8855279 |
agttttaattcaagttagatggttttaactcatgttagttgagattaaatcatggttaga |
8855220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 32925690 - 32925632
Alignment:
| Q |
142 |
gttagcaaa-ttagttaagtttgttttgattgcttactaagcaagttatgtaaataagc |
199 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
32925690 |
gttagcaaagttagttagttttgttttgattgcttagtaagcaagtaatgttaataagc |
32925632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 135 - 270
Target Start/End: Original strand, 30047476 - 30047612
Alignment:
| Q |
135 |
gctattagttagcaaatt-agttaagtttgttttgattgcttactaagcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaag |
233 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| | |
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| T |
30047476 |
gctattagttagcaaaatcagttcagtttgttttgattgcttactaagcaagctatgtaaataagctctttataagcatgttgtaaatattttttcacaa |
30047575 |
T |
|
| Q |
234 |
cttaatgagaatacagttttacaacaatcaattactc |
270 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
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| T |
30047576 |
cttaatgagaatacaattttacaacaatcaattactc |
30047612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 30067342 - 30067430
Alignment:
| Q |
180 |
agcaagttatgtaaataagctctatataagcatgttgtaaatagtttttcaaagcttaatgagaatacagttttacaacaatcaattac |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
30067342 |
agcaagttatgtaaataagcactatataagcatgttgtaaatagattttcacaacttaatgagaatatagttttacaacaatcaattac |
30067430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 30047360 - 30047397
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaaattag |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30047360 |
agttttaattcaagttagatggttttaactcaagttag |
30047397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 16598795 - 16598702
Alignment:
| Q |
152 |
tagttaagtttgttttgattgcttactaagcaagttatgta--aataagctctatataagcatgttgtaaatagtttttcaaagcttaatgagaat |
245 |
Q |
| |
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||||||||||||||| ||||||| | |||||||| ||||| ||||||||||||||||| |||||||| || |||||| | |||||||||||| |
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|
| T |
16598795 |
tagttaagtttgttt-gattgctaaataagcaagctatgtgtgaataagctctatataagttagttgtaaacag-ttttcacaacttaatgagaat |
16598702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 30067241 - 30067273
Alignment:
| Q |
46 |
agttttaattcaagttagatggttttaactcaa |
78 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
30067241 |
agttttaattcaagttagatgggtttaactcaa |
30067273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 7468128 - 7468076
Alignment:
| Q |
168 |
gattgcttactaagcaagttatgtaaataagctctatat-aagcatgttgtaa |
219 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
7468128 |
gattgcttactaagcaagttatgtgaataagccctatataaagcatgttgtaa |
7468076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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