View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-17 (Length: 313)
Name: NF4657-Insertion-17
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-17 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 38391253 - 38391053
Alignment:
| Q |
11 |
gaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatata |
110 |
Q |
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| T |
38391253 |
gaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatata |
38391154 |
T |
|
| Q |
111 |
ttatcttgatacacacatggtttgaacgattcccactttccaattccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactggt |
210 |
Q |
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| T |
38391153 |
ttatcttgatacacacatggtttgaacgattcccactttccaattccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactggt |
38391054 |
T |
|
| Q |
211 |
a |
211 |
Q |
| |
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| |
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| T |
38391053 |
a |
38391053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 38389820 - 38389931
Alignment:
| Q |
11 |
gaattattagtagttacttaaattgaaaaactacattattcaaacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatata |
110 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || |
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| T |
38389820 |
gaattattagtagttacttaaattgaaaaaccacattgttcagacctacatgacaaagttagaagatatagtaaaatgaattgcgcttcatgagtatgta |
38389919 |
T |
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| Q |
111 |
ttatcttgatac |
122 |
Q |
| |
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| T |
38389920 |
ttctcttgatac |
38389931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 39623809 - 39623982
Alignment:
| Q |
66 |
aagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttccaattccatacttgt |
165 |
Q |
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| T |
39623809 |
aagtttgaagatatagtgagatgaattgcgcttcatgagtaaatagtctcttga--caagcaagctttgaataattccaactttccaattccatacttgt |
39623906 |
T |
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| Q |
166 |
tggttgccaaggcagctgggtggcgtttagatttttctaactg-gtagcaagtttattagcaagggttatcccaac |
240 |
Q |
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| |||| ||| |||||||| |||| |||||| || || || || |||||||||| |||||||||| || ||||||| |
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| T |
39623907 |
ttgttgtcaaagcagctggatggcttttagacttgtcaaattgagtagcaagttcattagcaaggcttttcccaac |
39623982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 38391051 - 38391005
Alignment:
| Q |
267 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaa |
313 |
Q |
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| T |
38391051 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaa |
38391005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 39591048 - 39591189
Alignment:
| Q |
53 |
aacctacatgacaaagtttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttcca |
152 |
Q |
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||||||| || ||||||||||||||||| |||| |||||| | |||||||||| |||| |||||||| || | |||||| ||||||| |||||| |
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| T |
39591048 |
aacctacctggcaaagtttgaagatatataaaaacgaattgcgtttcatgagtaagtattctcttgataagcaa--gctttgaataattcccagtttcca |
39591145 |
T |
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| Q |
153 |
attccatacttgttggttgccaaggcagctgggtggcgtttaga |
196 |
Q |
| |
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| T |
39591146 |
attccatacttgttggttgtcaaagctgctgggtgacttttaga |
39591189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 38389776 - 38389653
Alignment:
| Q |
191 |
tttagatttttctaact-ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaatgcctctgcatactgtctaggcgttagaatccta |
289 |
Q |
| |
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||||||||||||||||| |||||||| || |||||||| | |||| ||||| || || |||| ||||||||||||| ||| | |||| || | | |||| |
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| T |
38389776 |
tttagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctctgcaaactctttaggtgtcacataccta |
38389677 |
T |
|
| Q |
290 |
taaggtttttcattttccgcccaa |
313 |
Q |
| |
|
|||| ||||||||||||||||||| |
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|
| T |
38389676 |
taagatttttcattttccgcccaa |
38389653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 39576914 - 39577024
Alignment:
| Q |
131 |
tttgaacgattcccactttccaattccatacttgttggttgccaaggcagctgggtggcgtttagatttttctaactg-gtagcaagtttattagcaagg |
229 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| | ||| |||||||| |||| |||||| || || || || ||| |||||| |||| ||||| |
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| T |
39576914 |
tttgaacaattcccgttttccaattccatacttgttggtcgtcaaagcagctggatggcttttagacttgtcaaattgagtaacaagttcattaccaagg |
39577013 |
T |
|
| Q |
230 |
gttatcccaac |
240 |
Q |
| |
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|| ||||||| |
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| T |
39577014 |
cttctcccaac |
39577024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 39540974 - 39541091
Alignment:
| Q |
70 |
ttgaagatatagtaaaatgaattgtgcttcatgagtatatattatcttgatacacacatggtttgaacgattcccactttccaattccatacttgttggt |
169 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||| |||| ||||| |||||||| ||| | ||| || |||||| ||||||| |||||| || ||||| |
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| T |
39540974 |
ttgaagatatagacaaatgagttgcgcttcataagtaaatattctcttgataaacaa--gctttaaaaagttcccattttccaactccatatttcttggt |
39541071 |
T |
|
| Q |
170 |
tgccaaggcagctgggtggc |
189 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
39541072 |
tgtcaaggcagctgggtggc |
39541091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 309
Target Start/End: Original strand, 38389958 - 38390106
Alignment:
| Q |
165 |
ttggttgccaaggcagctgggtggcgtttagatttttctaact-----ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaa-tgc |
258 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| || |||| |||||||||| || || || ||||| ||| |
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| T |
38389958 |
ttggttgccaaggcagctgggtgg-ttttagatttttcttactagctaggtagcaagtttaacaggaaggcttatcccaacatcagtgagttgaaattgc |
38390056 |
T |
|
| Q |
259 |
ctctgcatactgtctaggcgttagaatcctataaggtttttcattttccgc |
309 |
Q |
| |
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|| ||| ||| |||||| || | || | ||||||||||||||||| |||| |
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|
| T |
38390057 |
atc-gcaaactctctaggtgtcaaaaacatataaggtttttcatttaccgc |
38390106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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