View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4657-Insertion-2 (Length: 972)
Name: NF4657-Insertion-2
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 31684725 - 31685186
Alignment:
| Q |
8 |
aactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31684725 |
aactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacgaggaatgtgtaaagatattaaagaattgtaaggatgcaatatcaa |
31684824 |
T |
|
| Q |
108 |
cgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatat |
207 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684825 |
agaaaggtaaagaagggaaggtggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatat |
31684924 |
T |
|
| Q |
208 |
gttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
307 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684925 |
gtttatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
31685024 |
T |
|
| Q |
308 |
ttaggatcaacgcctatgattgagatctatccatgatccataatctataaaatctagccatttgtcatcatcataatgttgagtcaatgttatatat--- |
404 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31685025 |
ttaggatcaacgtctatgattgagatctatccatgatccataatctataaaatctagccatttgtcatcatcataatgttgagtcaatgttatatgtatc |
31685124 |
T |
|
| Q |
405 |
gtaaccacagtttctctact-atctattccttcttcctcatccatggtagaggagtgattgc |
465 |
Q |
| |
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||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
31685125 |
gtatccacaatttctctactcatctattccttcttcctcatccgtggtagaggagtgattgc |
31685186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 31704061 - 31704373
Alignment:
| Q |
29 |
aaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaacgaaaggtaaagaagggaagg |
128 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||| ||||||||| |||||||||| ||||||| | |
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|
| T |
31704061 |
aaattgcagtggatattgcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagggaaag |
31704160 |
T |
|
| Q |
129 |
tggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtatttgc |
228 |
Q |
| |
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|| || | || |||| ||| || || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31704161 |
tgattgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtacttgc |
31704260 |
T |
|
| Q |
229 |
aggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaattttaggatcaacgcctatgatt |
328 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || | | | ||| |
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|
| T |
31704261 |
aggaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactacaagattactccaattttaggtttaaggtcactaatt |
31704360 |
T |
|
| Q |
329 |
gagatctatccat |
341 |
Q |
| |
|
||||||||||||| |
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|
| T |
31704361 |
gagatctatccat |
31704373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 31712450 - 31712783
Alignment:
| Q |
8 |
aactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaa |
107 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| || ||||| | ||||| |||||||||||||||||| ||||||||| |
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|
| T |
31712450 |
aactcaaacaaagtcttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaa |
31712549 |
T |
|
| Q |
108 |
cgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatat |
207 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||| || || ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31712550 |
agaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactcttctttgatat |
31712649 |
T |
|
| Q |
208 |
gttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
307 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||| |||||||| || |||||||| | |||||||||| |||||||||||| || |||||| |
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| T |
31712650 |
gttgatgatggccctattaacaggaaaagagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaagataacaccaatt |
31712749 |
T |
|
| Q |
308 |
ttaggatcaacgcctatgattgagatctatccat |
341 |
Q |
| |
|
|||| | || | | ||||||||||||||||||| |
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|
| T |
31712750 |
ctaggcttaaggtccatgattgagatctatccat |
31712783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 31735396 - 31735700
Alignment:
| Q |
8 |
aactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaa |
107 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
31735396 |
aactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacgaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaa |
31735495 |
T |
|
| Q |
108 |
cgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatat |
207 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||| || || ||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| |
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|
| T |
31735496 |
agaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcggttgaaacaaaactcttctttgatat |
31735595 |
T |
|
| Q |
208 |
gttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
307 |
Q |
| |
|
||||||||||||| | | | ||||||||||||| | ||||||||||| |||| |||||||| || || |||||| ||||||||||||| ||||||||| |
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|
| T |
31735596 |
gttgatgatggtaacactcaccggaaaagagagaaccaagaaagaatgggttaaattgatttcttcggccggtttttgtgactacaagataactccaatt |
31735695 |
T |
|
| Q |
308 |
ttagg |
312 |
Q |
| |
|
||||| |
|
|
| T |
31735696 |
ttagg |
31735700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 541 - 732
Target Start/End: Original strand, 31674394 - 31674591
Alignment:
| Q |
541 |
tatgactcttcgtatatataac--attctctggtgttaaacacacaaattcaatcacatgtctcgt----ttccttctcaacaccgacagtgaatagaaa |
634 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| |||| |||||||||| ||| |||||||||| |
|
|
| T |
31674394 |
tatgactcttcgtatatatatagtattctctggtgataaacacgtgaattccatcacatgtctcgtctctttccctctcaacaccaacaatgaatagaaa |
31674493 |
T |
|
| Q |
635 |
tcatttaaaatagaactgtgagataaaatcaatatagcaaacctgcaaagacctctttgctgcgtcagaaacttcagaagctggatcaatttgtgcaa |
732 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| |
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|
| T |
31674494 |
tcgtttaaaatagaactgtaagataaaattaatatagcaaacctgcaaagacctttttgctgcctgagaaacttcagaagctggatcaaattgtgcaa |
31674591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 31715404 - 31715670
Alignment:
| Q |
35 |
cagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaacgaaaggtaaagaagggaaggtggtta |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| | | ||||||||||||||| |||||| ||| |
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|
| T |
31715404 |
cagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgatta |
31715503 |
T |
|
| Q |
135 |
tcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtatttgcaggaaa |
234 |
Q |
| |
|
|||| |||| ||| | || | |||||||||||| | |||||| | | ||||||||||||||||||||||| | |||||||| | | ||||| |
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|
| T |
31715504 |
tcatagacatggtggtggagaaagagaagggaaac---agtgaatcggctaaaacacaactcttctttgatatgctcatgatggtgttggccaccggaaa |
31715600 |
T |
|
| Q |
235 |
agagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactcca |
304 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||||| || || | |||||||||||| |||||| |
|
|
| T |
31715601 |
agagagaaccaagaaagaatgggttaagttgatttcctctgcagggttcaatgactacaagataactcca |
31715670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 886 - 953
Target Start/End: Original strand, 31686476 - 31686543
Alignment:
| Q |
886 |
cttccatgctggggcaagcatgccatggtttgcttcttctgttatagcctcaaattccttcccccaca |
953 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31686476 |
cttccatgatggggcaagcatgcaatggtttgcttcttctcttatagcctcaaattccttcccccaca |
31686543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 30571106 - 30571178
Alignment:
| Q |
230 |
ggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactc |
302 |
Q |
| |
|
|||||||||||||| || ||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
30571106 |
ggaaaagagagaaatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
30571178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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