View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-3 (Length: 940)
Name: NF4657-Insertion-3
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 513
Target Start/End: Original strand, 56161351 - 56161848
Alignment:
| Q |
21 |
atacaggttaaggtagaaatgatgcttattgagggtgacaacgttggtgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattg |
120 |
Q |
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| T |
56161351 |
atacaggttaaggtagaaatgatgcttattgagggtgacaacgttggtgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattg |
56161450 |
T |
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| Q |
121 |
gaactacccaatctaatctaaggtaacatactttgtctacaactcatgtgtgaca--acactacattaattaataacatgatctaaatgtttttattatt |
218 |
Q |
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| T |
56161451 |
gaactacccaatctaatctaaggtaacaaccattgtctacaactcatgtgtgacactacactacattaattaataacatgatctaaatgtttttat---t |
56161547 |
T |
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| Q |
219 |
atttgaatttgaataatgagtagcaaaaaagggacaggaaggcaaaattccattgcggacatggtgttaaaaacggtacaagaaagttgtgatgtcaaaa |
318 |
Q |
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| T |
56161548 |
atttgaatttgaatattgagtagcaaaaaagggccaggaaagcaaaattccattgcggacatggtgttaaaaaccgtacaagaaagttgtgatgtcaaaa |
56161647 |
T |
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| Q |
319 |
tcatatgtgaaggaaaagaagtgatcgaccagatgattaatgggttcagtacttcaaaacac------atcagaaacagtagcagttccagaatttctca |
412 |
Q |
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| T |
56161648 |
tcatatgtgaaggaaaagaagtaatcgatcagatgattaatgggttcagtacttcaaaacacaccagaaacagaaacagtagcagttccacaatttctca |
56161747 |
T |
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| Q |
413 |
tcatgtagaggaatcccatggttttgtcccactcaagcttttgatgcccaatctatcttggttatttcggtccagatttttatcaccaagatgactaaat |
512 |
Q |
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| T |
56161748 |
tcaagttaaggaatcccatggttttgtcccactcaagcttttcatgcccaatctatcttggttatttaggtccagatttttatcaccaagatgactaaat |
56161847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 528 - 818
Target Start/End: Original strand, 56161887 - 56162199
Alignment:
| Q |
528 |
ttttgtaaccaagtgattgagattggatac----------gtctagtctagaataaaagaccatcacagtcaacacctgtaatttcttacaaatcataga |
617 |
Q |
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| T |
56161887 |
ttttgtaaccaagtgattgagattggataccaaatgaatagtctagtctagaataaaagaccatcacagtcaacacctgtaatttcttacaaatcataga |
56161986 |
T |
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| Q |
618 |
tatttttaaatttccaggttggactaaatacattttcaattttgcatttaagatcgacaataatcttggtctaaaacattagctggacaaaatac----- |
712 |
Q |
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| T |
56161987 |
tatttttaaatttccaggttggactaaatacattttcaattttgcatttaagatcgacaataatcttggtctaaaacattagctggacaaaatacatatt |
56162086 |
T |
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| Q |
713 |
-------atattggactttttgttataagctcttcatttctattggagtttgaaaccttaaccatctccatagattcgttatcatattttgttagtccag |
805 |
Q |
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| T |
56162087 |
cacatttatattggactttttgttataagctcttcatttctattggagtttgaaaacttaaccatctctatagattcattatcatattttgttagtccag |
56162186 |
T |
|
| Q |
806 |
tctcttaatttat |
818 |
Q |
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|||| |||||||| |
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| T |
56162187 |
tctcataatttat |
56162199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 55761779 - 55761673
Alignment:
| Q |
68 |
tgaagccattgtggaccttgtagggaatctaaatataaggaaattggtgattggaactacccaatctaatctaaggtaacatactttgtctacaactcat |
167 |
Q |
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| T |
55761779 |
tgaagccattgtggaccgtgtagggagtctaaataaaag-aaattggtgattggaactacccaatctaatctaaggtaccacacgtggtctacaagtcaa |
55761681 |
T |
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| Q |
168 |
gtgtgaca |
175 |
Q |
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| T |
55761680 |
gtgtgaca |
55761673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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