View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-4 (Length: 870)
Name: NF4657-Insertion-4
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Complemental strand, 56190137 - 56189505
Alignment:
| Q |
11 |
ttacctctgcccttgaaccgaacgcagaatggttttgctgctgggcttctcaccttggctgagcatctccgttgtgcttctcgtggccagagtgctcctc |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56190137 |
ttacctctgcccttgaaccgaacacagaatggttttgctgctgggcttctcaccttggctgagcatctccgttgtgcttctcgtggccagagtgctcctc |
56190038 |
T |
|
| Q |
111 |
ttttctcactccgcattgttggccctacttcgcttgaagccccttcctctgctgcgtcaacctcttccgatagcaggttgaagctcaagcggcttgcacc |
210 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
56190037 |
ttctctcactccgcattgttggccctacttcgcttgaagccccttcctctgctgtgtcaacctcttccgataacaggttgaagctcaagcggcttgcacc |
56189938 |
T |
|
| Q |
211 |
tggtcttgtggagtcatcatctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctcctt |
310 |
Q |
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|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56189937 |
tgctcttgtggagttatcgtctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctcctt |
56189838 |
T |
|
| Q |
311 |
aat----------ttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgagttttgaaaa-ctgttattttctgtgctgggcc |
399 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
56189837 |
actccaacccagtttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgggttttgaaaaactgttatcttctgtgctgggcc |
56189738 |
T |
|
| Q |
400 |
ctaaggctaaggaaagaggttcctttaggttgttgaaggcagatgtttctgctcagacttttgtaaagataggctttcaagctgagaagaagttgaagga |
499 |
Q |
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| T |
56189737 |
ctaaggctaaggaaaaaggttcctttaggttgttgaaggcagatgtttctgctcagacttttgtaaagataggctttcaagctgagaagaagttgaagga |
56189638 |
T |
|
| Q |
500 |
aggagatggtgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagattgcaatttgaggtgctggcaaaagtggatggtgataaa |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56189637 |
aggagatggtgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagattgcaatttgaggtgctggcaaaagtggatggtgataaa |
56189538 |
T |
|
| Q |
600 |
gtcatccctgagagagtcgtgcaagtgaaccct |
632 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
56189537 |
gtcatacctgagagagtcgtgcaagtgaaccct |
56189505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 631 - 870
Target Start/End: Complemental strand, 56189441 - 56189201
Alignment:
| Q |
631 |
ctattgttcagcctccgcccatccccttcgccttgtaattagtgggaaaggtttgatttttgtatactttacacaaaggaattgtagagtggattcttgg |
730 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56189441 |
ctattgttcagcctccgcccatccccttcgccttgtaattagtgggaaaggtttgatttttgtatactttacacaaaggaattgtagagtggattcttgg |
56189342 |
T |
|
| Q |
731 |
tttgcctttgatgtatagcacgtaatagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttacttgcccatttgcttctgattctgat |
830 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56189341 |
tttgcctttgatgtatagcacgtcatagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttatttgcccatttgcttctgattctgat |
56189242 |
T |
|
| Q |
831 |
aatttataattttaatatttctc-aagctattcagagtaac |
870 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
56189241 |
aatttataattttaatatttctcaaagctattcagagtaac |
56189201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 637
Target Start/End: Original strand, 2391130 - 2391759
Alignment:
| Q |
10 |
tttacctctgcccttgaaccgaacgcagaatggttttgctgctgggcttctcaccttggctgagcatctccgttgtgcttctcgtggccagagtgctcct |
109 |
Q |
| |
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|||||||||||| || ||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
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| T |
2391130 |
tttacctctgccgttaaaccgaagccaaaatggctttgctgccgggcttctcacgttggctgagcatctccgccatgcttctcgtggccaagatgctccc |
2391229 |
T |
|
| Q |
110 |
cttttctcactccgcattgttggccctacttcgcttgaagccccttcctctgctgcgtcaacctcttccgatagcaggttgaagctcaagcggcttgcac |
209 |
Q |
| |
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||| | |||||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||| |||||||||||| ||||| ||||||| |
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| T |
2391230 |
cttctttcactccggattgttggtcctacctcacttgaagccccttcctctgca---tcaacttcttctaataacaggttgaagcttaagcgtcttgcac |
2391326 |
T |
|
| Q |
210 |
ctggtcttgtggagtcatcatctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctcct |
309 |
Q |
| |
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||||||||||||||| ||| |||||||||||| ||||| | | || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2391327 |
ctggtcttgtggagttatcctctcaatcaaaatccaaa------ttagttgacacttccctgtctaccgttgatctccaggaggaagccccgaccctcct |
2391420 |
T |
|
| Q |
310 |
taat----------ttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgagttttgaaa-actgttattttctgtgctgggc |
398 |
Q |
| |
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|| | |||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| | | |||||| ||||||| |||| |
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| T |
2391421 |
tactcctacccagtttaccgcattgtggcctcttgcctctcttaatggatcaaatgcaaacttgttgggttttgagagattgttatcttctgtgttgggt |
2391520 |
T |
|
| Q |
399 |
cctaaggctaaggaaagaggttcctttaggttgttgaaggcagatgtttctgctcagacttttgtaaagataggctttcaagctgagaagaagttgaagg |
498 |
Q |
| |
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|||||||| || |||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||| |||| | |
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| T |
2391521 |
cctaaggcgaatgaaaaaggttccttcaggttgttgaaggctgatgtttctgctcagacttttgtgaagataggattccaagctgagaagaagctgaaag |
2391620 |
T |
|
| Q |
499 |
aaggagatggtgttagttttgagggtttccccaaatggaggaccaagcctgagactgtgagattgcaatttgaggtgctggcaaaagtggatggtgataa |
598 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| |
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| T |
2391621 |
aaggagatgggattagttttgagggtttccctgaatggaggactaagcctgacactgtgaggttgcattttgaggtgctggctaaagttgatggtgataa |
2391720 |
T |
|
| Q |
599 |
agtcatccctgagagagtcgtgcaagtgaaccctattgt |
637 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| |||| |
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|
| T |
2391721 |
agtcatacctgagagagtcatgcaagtgaaccctgttgt |
2391759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 636 - 832
Target Start/End: Original strand, 2391824 - 2392023
Alignment:
| Q |
636 |
gttcagcctccgcccatccccttcgccttgt-aattagtgggaaaggtttgatttttgtatactttacac-aaaggaattgtagagtggattcttggttt |
733 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||| ||||||| | ||||||||||||||| ||||||| | || |
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| T |
2391824 |
gttcagcctccgcccatccccttcgccttgtaaatcagtggcaagggtttgatttttgtaaactttactcaaaaggaattgtagaggggattctcgtctt |
2391923 |
T |
|
| Q |
734 |
gcctttgatgtatag--cacgtaatagttaagatacttgtaaaaaatgctaagtaatgagaaagttgtttttacttgcccatttgcttctgattctgata |
831 |
Q |
| |
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||||||||| ||||| |||| |||||||| | ||||||| ||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
2391924 |
gcctttgatatatagtaaacgtcatagttaacacacttgtacaaaatgccgagtaatgagaaagtt-tttttatttgtccatttgcttctgattctgata |
2392022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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