View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-6 (Length: 640)
Name: NF4657-Insertion-6
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 14431335 - 14431582
Alignment:
| Q |
8 |
aatcgttgatggtgaatttgacggggaagttccatgtagggcttgttccaccgtcacggtgcctgtgggtggtggcagtttgtgggtttaatggatcgcc |
107 |
Q |
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| T |
14431335 |
aatcgttgatggtgaatttgacggggaagttccatgtagggcttgttccaccgtcacgatgcctgtgggtggtggcagtttgtgggtttaatggatcgcc |
14431434 |
T |
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| Q |
108 |
ggtgattgaaacgacggcgtaaatgtccatcttggagaaaagattaacatttttgagatcttttgcggatatgatgttgagttctaaggttctatattcc |
207 |
Q |
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| T |
14431435 |
tgagattgaaacgacggcgtaaacgtccatcttggagaaaagattaacatttttgagatctttagcggatatgatgttgagttctaaggttctatattcc |
14431534 |
T |
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| Q |
208 |
atgttcatgaacaaagaaagat---taaagagtttgagattcgagaga |
252 |
Q |
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| T |
14431535 |
atgttcatgaacaaagaaagattaataaagagtttgagattcgagaga |
14431582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 309 - 537
Target Start/End: Original strand, 14431636 - 14431868
Alignment:
| Q |
309 |
tataaatataacaaggttttgagatttctggatgtttatacgatgtaactgaaggtatttataatttgttataggaaacttccaggtaagtactttttta |
408 |
Q |
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| T |
14431636 |
tataaatataacaaggttttgagatttctggatgtttatacgatgtaacagaaggtatttataatttgttacaggaaacttccaggtaagtactttttta |
14431735 |
T |
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| Q |
409 |
ttagtatagtattttacgcgtaacttatgtgttaatgnnnnnnngtttggaaaagaggtttatcatatttctaattttatttactctgttgtt----tat |
504 |
Q |
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| T |
14431736 |
ttagtatagtattttacgcgtaacttatgtgttaatgttattttgtttggaaaagaggttgatcatatttctaattttatttactctgttatttatctat |
14431835 |
T |
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| Q |
505 |
ctgttgataatagttatccacaaatatgagagg |
537 |
Q |
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| T |
14431836 |
ctgttgataatagttatccacaaatatgagagg |
14431868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 572 - 640
Target Start/End: Original strand, 14431900 - 14431967
Alignment:
| Q |
572 |
aatttatttactctcatactcgagataaataagcctatgaaagtttgacattttaggtttcaaactgta |
640 |
Q |
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| T |
14431900 |
aatttatttactctcatactcgagataaataagcctatgaaag-ttgacattttaggtttgaaactgta |
14431967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 15275525 - 15275350
Alignment:
| Q |
25 |
ttgacggggaagttccatgtagggcttgttccaccgtcacggtgcctgtgggtggtggcagtttgtgggtttaatggatcgccggtgattgaaacgacgg |
124 |
Q |
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| T |
15275525 |
ttgaccgggatgttccatgtggggtttcttccagcatgacggtggatgtgggtggtggtgatttgtgggttgagtgggtcgccgaggattgaaacaatgg |
15275426 |
T |
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| Q |
125 |
cgtaaatgtccatcttggagaaaagattaacatttttgagatcttttgcggatatgatgttgagttctaaggttct |
200 |
Q |
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| T |
15275425 |
cgtatacggacatctgggagaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggttct |
15275350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 15263774 - 15263718
Alignment:
| Q |
144 |
gaaaagattaacatttttgagatcttttgcggatatgatgttgagttctaaggttct |
200 |
Q |
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| T |
15263774 |
gaaaatattaacatctttgagatcttttgcggaaatcatgttgagttctaaggttct |
15263718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 15251329 - 15251204
Alignment:
| Q |
75 |
ggtggtggcagtttgtgggtttaatggatcgccggtgattgaaacgacggcgtaaatgtccatcttggagaaaagattaacatttttgagatcttttgcg |
174 |
Q |
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| T |
15251329 |
ggtggtggtggtttgtgggttgatttggtcgccggagattgaaacaacggcatataccgacgtcttggagaaaagattaaaacctttgagatcttttgca |
15251230 |
T |
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| Q |
175 |
gatatgatgttgagttctaaggttct |
200 |
Q |
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| T |
15251229 |
catattatgttaagttctaaggttct |
15251204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 12836154 - 12836212
Alignment:
| Q |
152 |
taacatttttgagatcttttgcggatatgatgttgagttctaaggttctatattccatg |
210 |
Q |
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| T |
12836154 |
taacatctttgacatcttttgcggatatcatcttgatttccaaggttctgtattccatg |
12836212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 49624026 - 49623932
Alignment:
| Q |
100 |
ggatcgccggtgattgaaacgacggcgtaaatgtccatcttggagaaaagattaacatttttgagatcttttgcggatatgatgttgagttctaa |
194 |
Q |
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| T |
49624026 |
ggatcgccgaagattgaaacaacggcgtaaacatccattttgtagaagaggttaacgttgttgagatcttttgctgatgagaggttgagttctaa |
49623932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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