View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657-Insertion-7 (Length: 550)

Name: NF4657-Insertion-7
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657-Insertion-7
NF4657-Insertion-7
[»] chr8 (3 HSPs)
chr8 (32-385)||(9040750-9041092)
chr8 (8-39)||(9041101-9041132)
chr8 (206-266)||(25939321-25939381)
[»] chr4 (10 HSPs)
chr4 (141-298)||(4873045-4873202)
chr4 (160-301)||(44307841-44307982)
chr4 (225-301)||(44307811-44307885)
chr4 (188-262)||(24680766-24680840)
chr4 (141-239)||(25812307-25812404)
chr4 (226-275)||(48292387-48292436)
chr4 (152-244)||(25411591-25411685)
chr4 (141-182)||(2605471-2605512)
chr4 (141-182)||(25812263-25812304)
chr4 (141-181)||(53860895-53860935)
[»] chr1 (4 HSPs)
chr1 (141-255)||(30018614-30018729)
chr1 (141-243)||(31142440-31142542)
chr1 (259-301)||(24204836-24204878)
chr1 (147-181)||(49632855-49632889)
[»] chr6 (6 HSPs)
chr6 (193-276)||(22996987-22997070)
chr6 (193-276)||(23791331-23791414)
chr6 (188-279)||(18142410-18142501)
chr6 (147-238)||(13613762-13613853)
chr6 (188-279)||(30015067-30015157)
chr6 (203-244)||(12120170-12120211)
[»] chr5 (7 HSPs)
chr5 (163-276)||(10507593-10507706)
chr5 (226-268)||(6706295-6706337)
chr5 (141-254)||(8367030-8367143)
chr5 (204-244)||(14123041-14123081)
chr5 (187-262)||(5506879-5506954)
chr5 (207-268)||(14613571-14613632)
chr5 (204-244)||(12075925-12075965)
[»] chr7 (6 HSPs)
chr7 (160-301)||(7183912-7184053)
chr7 (195-279)||(22555289-22555373)
chr7 (204-244)||(5617894-5617934)
chr7 (227-279)||(22555367-22555418)
chr7 (259-301)||(19513379-19513421)
chr7 (144-266)||(37701279-37701403)
[»] chr3 (4 HSPs)
chr3 (148-209)||(29722742-29722803)
chr3 (260-301)||(11457344-11457385)
chr3 (207-268)||(26452822-26452883)
chr3 (207-268)||(32609395-32609456)
[»] chr2 (4 HSPs)
chr2 (225-301)||(37041665-37041741)
chr2 (141-221)||(28564275-28564356)
chr2 (203-268)||(37629605-37629669)
chr2 (144-183)||(37096606-37096645)
[»] scaffold0110 (2 HSPs)
scaffold0110 (193-262)||(11469-11538)
scaffold0110 (193-262)||(19206-19275)
[»] scaffold0197 (1 HSPs)
scaffold0197 (207-283)||(25979-26055)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 32 - 385
Target Start/End: Complemental strand, 9041092 - 9040750
Alignment:
Q  32 gttgggctgtctttgtggacgaaggcccagtccagaacaaaaaggattggacaacaatgaagaaggaaagaagagtaaggaagcttgcttcnnnnnnnnn 131  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||              
T  9041092 gttgggctatctttgtggacgaaggcccagtccaaaacaaaaaggattggacaacaatgaagaaggaaagaagagtaaagaagcttgctt---------- 9041003  T
Q  132 nnnnnnnnnacattcattgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtag 231  Q
             |||||||||||||||||||||||||| |||||||  ||||||  |  |||| ||||||||| || |||||||||||||||||||||  ||     
T  9041002 ---tttttgacattcattgtttcctagaaacacatggaaatgactaaaaactcagcggtagttaactatcatcagttttctagttataagcatgcaatat 9040906  T
Q  232 ttaactaccgctgaagtgtttttggttatttccatgtattattaggaacttcttgaagtcaaaaaagcaaattttaagagta-aaaagaagatagttgga 330  Q
    |||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9040905 ttaactaccgctgaagtgtttttggttatttctacgtgttattaagaacttcttgaagtcaaaaaagcaatttttaagagtaaaaaagaagatagttgga 9040806  T
Q  331 gaataagagag-aaacgttgatcggtgtttcctaaacatgtaaaagaaaactttta 385  Q
    ||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||    
T  9040805 gaataagagagaaaacgtagattgttgtttcctaaacatgtaaaagaaaactttta 9040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 9041132 - 9041101
Alignment:
Q  8 tcccctttgtatgcctcatggatcgttgggct 39  Q
    ||||||||||||||||||||||||||||||||    
T  9041132 tcccctttgtatgcctcatggatcgttgggct 9041101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 25939381 - 25939321
Alignment:
Q  206 gttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccat 266  Q
    ||||| |||||||||||  |||||||||||||||||||   |||||||||||  |||||||    
T  25939381 gttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccat 25939321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 141 - 298
Target Start/End: Complemental strand, 4873202 - 4873045
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactacc 240  Q
    |||| |||| ||||||| ||||||||  ||||||  ||||||| | ||||| ||||||| | || ||||||||||||||||   ||||||||||||||||    
T  4873202 acatccattctttcctaaaaacacatgaaaatgactaaaaacccagtggtagttaactaccatcagttttctagttataagtcagcggtagttaactacc 4873103  T
Q  241 gctgaagtgtttttggttatttccatgtattattaggaacttcttgaagtcaaaaaag 298  Q
    ||||||||||||||| | |||||||||| || |||| || |  | |||||||||||||    
T  4873102 gctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaag 4873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 44307841 - 44307982
Alignment:
Q  160 aacacatagaaatgatcaaaaacct-aatggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggtt 258  Q
    ||||||| ||||||| ||||||  | || |||| ||||||| |  |||||||||||||| || || ||||||||||||||||||||  || |||| |       
T  44307841 aacacatggaaatgaccaaaaaattcaacggtagttaactaccgccggttttctagttaaaatcaggcggtagttaactaccgctggggtattttagac- 44307939  T
Q  259 atttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  44307940 atttccatgtattattaggaacttttggaagtcaaaaaagcaa 44307982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 44307885 - 44307811
Alignment:
Q  225 gcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    ||||||||||||||||| ||||   |||||||| |||||||||| |||| |||||||||| ||||||| ||||||||    
T  44307885 gcggtagttaactaccgttgaa--ttttttggtcatttccatgtgttatcaggaacttctggaagtcagaaaagcaa 44307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 24680840 - 24680766
Alignment:
Q  188 ggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttattt 262  Q
    |||||||||||| | |||||| |||||||||||||  |||||||||||||||| || || | ||||| |||||||    
T  24680840 ggtaattaactaccgtcggttctctagttataagccagcggtagttaactaccacttaaatatttttagttattt 24680766  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 25812404 - 25812307
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactac 239  Q
    ||||||||||||||||| |||||| |  |||||| | ||||  ||  ||||||||||||| | ||||||||||||||||| |  |||||||||||||||    
T  25812404 acattcattgtttcctaaaaacacgtgaaaatgacctaaaatttagcggtaattaactatgt-cggttttctagttataaaccagcggtagttaactac 25812307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 48292387 - 48292436
Alignment:
Q  226 cggtagttaactaccgctgaagtgtttttggttatttccatgtattatta 275  Q
    ||||||||||||||||||| |||||||||||| |||| ||||| ||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgttatta 48292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 25411591 - 25411685
Alignment:
Q  152 ttcctagaaacacatagaaatga-tcaaaaacctaatggtaattaactatcttcggtttt-ctagttataagcatgcggtagttaactaccgctg 244  Q
    |||||||||||||||  | |||| | ||||| |||| |||| ||||||| | | |||||| |||||||||||  |||||||||||||||||||||    
T  25411591 ttcctagaaacacatgtacatgactaaaaaaactaacggtagttaactaccgttggtttttctagttataagtctgcggtagttaactaccgctg 25411685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 2605512 - 2605471
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaac 182  Q
    |||| |||| |||||||||||||||| |||||||||||||||    
T  2605512 acatccattatttcctagaaacacatggaaatgatcaaaaac 2605471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 25812263 - 25812304
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaac 182  Q
    |||| |||||||| |||||||||||| |||||||||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaac 25812304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 53860935 - 53860895
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaa 181  Q
    |||| ||||||||||||||||||||| ||||||| ||||||    
T  53860935 acatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 30018729 - 30018614
Alignment:
Q  141 acattcattgtttcctagaaa-cacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactac 239  Q
    |||| |||||||||||||||| ||||| ||||||| |||||||| || |||| ||||||| |  || ||||||||||||||||| ||| |||||||||||    
T  30018729 acatccattgtttcctagaaaacacatggaaatgaccaaaaacccaacggtagttaactaccgccgattttctagttataagcacgcgatagttaactac 30018630  T
Q  240 cgctgaagtgtttttg 255  Q
    ||||  ||||||||||    
T  30018629 cgcttgagtgtttttg 30018614  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 31142440 - 31142542
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactacc 240  Q
    |||| |||| |||| ||||||||||| ||||| |||||||||  |  |||| ||||||| | ||||||||| |||||||||   | ||||||||||||||    
T  31142440 acatccattatttcatagaaacacatggaaataatcaaaaactcagcggtagttaactaacgtcggttttccagttataagttggtggtagttaactacc 31142539  T
Q  241 gct 243  Q
    |||    
T  31142540 gct 31142542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 24204878 - 24204836
Alignment:
Q  259 atttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    ||||||||||||| || ||||||| ||||||||||||||||||    
T  24204878 atttccatgtattttttggaacttattgaagtcaaaaaagcaa 24204836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 49632855 - 49632889
Alignment:
Q  147 attgtttcctagaaacacatagaaatgatcaaaaa 181  Q
    |||||||||||||||||||||||||||| ||||||    
T  49632855 attgtttcctagaaacacatagaaatgaccaaaaa 49632889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 22996987 - 22997070
Alignment:
Q  193 ttaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattag 276  Q
    ||||||| | |||||||||||||||||| || |  ||||||||||||||||||||| |||||||| |||| ||||| |||||||    
T  22996987 ttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgttattag 22997070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 23791414 - 23791331
Alignment:
Q  193 ttaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattag 276  Q
    ||||||| | |||||||||||||||||| || |  ||||||||||||||||||||| |||||||| |||| ||||| |||||||    
T  23791414 ttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgttattag 23791331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 18142410 - 18142501
Alignment:
Q  188 ggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaa 279  Q
    |||| ||||||| | | ||||||||||| |||| || ||| ||||||||||||||||| |||||||| || |||| ||||| ||||||||||    
T  18142410 ggtagttaactaccgttggttttctagtcataaacaagcgctagttaactaccgctgaggtgtttttagtcattttcatgtgttattaggaa 18142501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 13613762 - 13613853
Alignment:
Q  147 attgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaacta 238  Q
    ||||||| ||||||||||||  |||||| ||||||   ||||||||||||||| | ||| ||||||||||| ||||  | ||||||||||||    
T  13613762 attgttttctagaaacacatgaaaatgaccaaaaattcaatggtaattaactaccgtcgattttctagttagaagccagtggtagttaacta 13613853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 30015157 - 30015067
Alignment:
Q  188 ggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaa 279  Q
    |||||||||||||| || |||||||  |||||||   |||||||||||||||||||| || ||||||||| |||| ||||| || |||||||    
T  30015157 ggtaattaactatcgtcagttttctgtttataagttcgcggtagttaactaccgctgtag-gtttttggtaattttcatgtgtttttaggaa 30015067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 12120170 - 12120211
Alignment:
Q  203 tcggttttctagttataagcatgcggtagttaactaccgctg 244  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  12120170 tcggttttctagttataagctagcggtagttaactaccgctg 12120211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 10507593 - 10507706
Alignment:
Q  163 acatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttattt 262  Q
    |||| ||||||| |||||||  | |||||||||| |||   |||||||||||||||||    | |||||||||||||||||||| ||||||| || ||||    
T  10507593 acatggaaatgaccaaaaactcagtggtaattaattatagccggttttctagttataaattagtggtagttaactaccgctgaaatgtttttagtcattt 10507692  T
Q  263 ccatgtattattag 276  Q
    ||||||||| ||||    
T  10507693 ccatgtatttttag 10507706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 6706337 - 6706295
Alignment:
Q  226 cggtagttaactaccgctgaagtgtttttggttatttccatgt 268  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  6706337 cggtagttaactaccgctgaaatgtttttggttattttcatgt 6706295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 8367030 - 8367143
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactacc 240  Q
    |||| ||||||||||||||||| ||||||||||| |||||||  |  |||| ||||||| |  || |||| ||||||| | |  | ||||||||||||||    
T  8367030 acatccattgtttcctagaaacccatagaaatgaccaaaaactcagcggtagttaactaccaccgattttttagttatcaaccagtggtagttaactacc 8367129  T
Q  241 gctgaagtgttttt 254  Q
    |||  |||||||||    
T  8367130 gcttgagtgttttt 8367143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 14123081 - 14123041
Alignment:
Q  204 cggttttctagttataagcatgcggtagttaactaccgctg 244  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  14123081 cggttttctagttataagccagcggtagttaactaccgctg 14123041  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 5506954 - 5506879
Alignment:
Q  187 tggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttattt 262  Q
    ||||||||||||| |  || ||||||||||||||||  |  | ||||||||||||||||  |||||||||||||||    
T  5506954 tggtaattaactaccgccgattttctagttataagccagtcgcagttaactaccgctgagatgtttttggttattt 5506879  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 14613632 - 14613571
Alignment:
Q  207 ttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgt 268  Q
    ||||||||||||||||  || || | ||||||||| || ||||||||||||||||| |||||    
T  14613632 ttttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgt 14613571  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 12075965 - 12075925
Alignment:
Q  204 cggttttctagttataagcatgcggtagttaactaccgctg 244  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  12075965 cggttttctagttataagtcagcggtagttaactaccgctg 12075925  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 301
Target Start/End: Complemental strand, 7184053 - 7183912
Alignment:
Q  160 aacacatagaaatga-tcaaaaacctaatggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggtt 258  Q
    ||||||||||||||| | |||||| ||  |||||||||||| | ||| ||||||| |||||||    | ||||||||||||||| ||||| |||| |       
T  7184053 aacacatagaaatgactaaaaaacttagcggtaattaactaccgtcgattttctaattataagtcaccagtagttaactaccgccgaagtattttagac- 7183955  T
Q  259 atttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    |||| ||||||||||||||||||| |  |||||||||||||||    
T  7183954 attttcatgtattattaggaacttttaaaagtcaaaaaagcaa 7183912  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 22555373 - 22555289
Alignment:
Q  195 aactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaa 279  Q
    ||||| ||||||||||||||||||||     ||||||||||||| || | | |||||||||||||| ||||||| ||||||||||    
T  22555373 aactaccttcggttttctagttataaatcaacggtagttaactatcgttaaggtgtttttggttatgtccatgtgttattaggaa 22555289  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 5617934 - 5617894
Alignment:
Q  204 cggttttctagttataagcatgcggtagttaactaccgctg 244  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  5617934 cggttttctagttataagccagcggtagttaactaccgctg 5617894  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 22555367 - 22555418
Alignment:
Q  227 ggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaa 279  Q
    ||||||| |||||||||||| | |||||||| |||||||||||||||||||||    
T  22555367 ggtagtttactaccgctgaatt-tttttggtcatttccatgtattattaggaa 22555418  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 19513379 - 19513421
Alignment:
Q  259 atttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||    
T  19513379 atttccatgtgttattagaaacttcttgaagtcagaaaagcaa 19513421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 37701403 - 37701279
Alignment:
Q  144 ttcattgtttcctagaaacacatagaaatgatcaaaaacct--aatggtaattaactatcttcggttttctagttataagcatgcggtagttaactaccg 241  Q
    ||||||||||| || ||| |||| ||||| ||||||||  |  || |||| ||||||| | ||| |||| ||||||||||   |||||||||||||||      
T  37701403 ttcattgtttcttaaaaatacatggaaattatcaaaaaaattcaacggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaa 37701304  T
Q  242 ctgaagtgtttttggttatttccat 266  Q
    | |||||||||||| | ||||||||    
T  37701303 ccgaagtgtttttgatcatttccat 37701279  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 29722742 - 29722803
Alignment:
Q  148 ttgtttcctagaaacacatagaaatgatcaaaaacctaatggtaattaactatcttcggttt 209  Q
    ||||||||||||||||||| |||||||| ||||| |||| |||| ||||||||| |||||||    
T  29722742 ttgtttcctagaaacacatggaaatgataaaaaatctaacggtagttaactatcgtcggttt 29722803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 11457385 - 11457344
Alignment:
Q  260 tttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  11457385 tttccatgtattattaggaactttttgaagtcagaaaagcaa 11457344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 26452883 - 26452822
Alignment:
Q  207 ttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgt 268  Q
    ||||||||||||||||  ||||||||||||||  ||||  ||||||||||| |||| |||||    
T  26452883 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgt 26452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 32609456 - 32609395
Alignment:
Q  207 ttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgt 268  Q
    |||||||||||||||   |||||| |||| || | |||||||||||||| ||||||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgt 32609395  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 37041741 - 37041665
Alignment:
Q  225 gcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaacttcttgaagtcaaaaaagcaa 301  Q
    ||||||||||||||||||| | |   |||| | ||||||||||| ||||||||||||||| ||||||| ||||||||    
T  37041741 gcggtagttaactaccgctcagggtattttagatatttccatgtgttattaggaacttctggaagtcagaaaagcaa 37041665  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 28564275 - 28564356
Alignment:
Q  141 acattcattgtttcctagaaacacatagaaatgatc-aaaaacctaatggtaattaactatcttcggttttctagttataag 221  Q
    ||||||| ||||||||| |||||||| ||||||||| ||||||| |  |||||||||||| || || ||||||| |||||||    
T  28564275 acattcaatgtttcctaaaaacacatggaaatgatcaaaaaacccagcggtaattaactacctccgattttctaattataag 28564356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 37629605 - 37629669
Alignment:
Q  203 tcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgt 268  Q
    |||||||||||||||||||   |||||||||||||| || |||| |||||||||| ||||||||||    
T  37629605 tcggttttctagttataagtcagcggtagttaactatcgatgaa-tgtttttggtcatttccatgt 37629669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 37096606 - 37096645
Alignment:
Q  144 ttcattgtttcctagaaacacatagaaatgatcaaaaacc 183  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  37096606 ttcattgttttctagaaacacatggaaatgatcaaaaacc 37096645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 11538 - 11469
Alignment:
Q  193 ttaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttattt 262  Q
    ||||||| | |||||||||||||||||||   || |||||||||||| |||| | |||||||||| ||||    
T  11538 ttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattt 11469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 19275 - 19206
Alignment:
Q  193 ttaactatcttcggttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttattt 262  Q
    ||||||| | |||||||||||||||||||   || |||||||||||| |||| | |||||||||| ||||    
T  19275 ttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattt 19206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 26055 - 25979
Alignment:
Q  207 ttttctagttataagcatgcggtagttaactaccgctgaagtgtttttggttatttccatgtattattaggaacttc 283  Q
    |||||||||||||||   ||||||||||||||||| || ||   |||| |  |||||||||| ||||||||||||||    
T  26055 ttttctagttataagtcagcggtagttaactaccgttggaggtatttttgacatttccatgtgttattaggaacttc 25979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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