View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-8 (Length: 534)
Name: NF4657-Insertion-8
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 11774453 - 11774220
Alignment:
| Q |
8 |
agtaggtcagtatattttgcaacatctacgtagcaatatctgtatatctgaacctttcgatgaagagaatgagattccttatcatacctacaaaaactga |
107 |
Q |
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| T |
11774453 |
agtaggtcagtatattttgcaacatctacatagcaatatctgtatatctgaacctttcgatgaagagaatgagattccttatcatacctacaaaaactga |
11774354 |
T |
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| Q |
108 |
ttccacaatccaaacaaaacacattcttctcattaaacttttctttgtggtttttgcaatttccaaacctatccatcaaaaatgcatcaagccaatcttc |
207 |
Q |
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| T |
11774353 |
ttccacaatccaaacaaaacacattcttctcattaaacttttctttgtggtttttgcaatttccaaacctatccatcaaaagtgcatcaagccaatcttc |
11774254 |
T |
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| Q |
208 |
ttttccatttggtaaactacgcttcaccatctgc |
241 |
Q |
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| T |
11774253 |
ttttccatttggtaaactacgcttcaccatctgc |
11774220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 330 - 534
Target Start/End: Complemental strand, 11774013 - 11773808
Alignment:
| Q |
330 |
ctatagagtgaaaaaccaatcttgcaactaaaataaacttgaatgctccaaaatttgtgaatgtggaaaagggtgtgaaatattgaattatcataaaatt |
429 |
Q |
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| T |
11774013 |
ctatagagtgaaaaaccaatcttgcaactaaaataaacttgaatgctccaaaatttgtgaatgtggaaaagggtgtgaaatattgaattatcatgaaatt |
11773914 |
T |
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| Q |
430 |
gtgaaattgcaatcaaactttcaaacnnnnnnnnctaaaagaacacatgc-aaaaaataagaaattgataaacaagaagtttatgagctaacaatgttta |
528 |
Q |
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| T |
11773913 |
gtgaaattgcaatcaaactttcaaacaaaaaaaactaaaagaacacatgcaaaaaaataagaaattgataaacaagaagtttatgagctaacaatgttta |
11773814 |
T |
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| Q |
529 |
cctttg |
534 |
Q |
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| T |
11773813 |
cctttg |
11773808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 11774171 - 11774138
Alignment:
| Q |
296 |
gaaacatgaagacaaattcaatgatcaaggatca |
329 |
Q |
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| T |
11774171 |
gaaacatgaagacaaattcaatgatcaaggatca |
11774138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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