View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657-Insertion-9 (Length: 447)
Name: NF4657-Insertion-9
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 36164101 - 36163664
Alignment:
| Q |
8 |
atatattcctcccatgcagtataattgcaatttgcagtcggcacatgcctaaattcaggggtcagcatccagtatatcttgcatgtatatcactcaataa |
107 |
Q |
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| T |
36164101 |
atatattgctcccatgcagtataattgcaatttgcagtctgcacatgcctaaattcaggggtcagcatccagtatatcttgcatgtatatcactcaataa |
36164002 |
T |
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| Q |
108 |
tgagaagcaatgtaggataatttgaagcaatgtttgtattcctaagtcactttataccatgcatattcacatgaggttttgtctaatacgcgtaaagaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36164001 |
tgagaagcaatgtaggataatttgaagcaatgtttgtattcctaagtcactttataccatgcatattcacatgaggttttgtctaatacgcgtaaggaaa |
36163902 |
T |
|
| Q |
208 |
agaatcttgcaccatgcataagcgtgtgtattttgactattggatttataagtctaatcatatctcatttgatctaatagtaaaaattaatttgtgtata |
307 |
Q |
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| T |
36163901 |
agaatcttgcaccatgcataagcctgtgtattttgactattgaatttataagtctaatcatatctcatttgatctaatagtaaaaattaatttgtgtata |
36163802 |
T |
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| Q |
308 |
ttaaaagagttacgtcacttgtacatcgtagaatcgtcctttaaaggaaaccnnnnnnnnnnnnnttctacataagtggaagaaacaacacacaatcata |
407 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
36163801 |
ttaaaagagttacgtcacttgtatatcgtagaatcgttcttcaaaggaaatcaaaaagagaaattttctacataagtggaagaaacaacacacaatcata |
36163702 |
T |
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| Q |
408 |
atagtaataataaaaaagacaactcacaaaatttaact |
445 |
Q |
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| T |
36163701 |
atagtaataataaaaaagacaactcacaaaacttaact |
36163664 |
T |
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Back To:
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 32235547 - 32235501
Alignment:
| Q |
41 |
gcagtcggcacatgcctaaattcaggggtcagcatccagtatatctt |
87 |
Q |
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|||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
32235547 |
gcagtctgcacatgactcaattcaggggtcagcatccagtatatctt |
32235501 |
T |
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