View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_high_1 (Length: 562)

Name: NF4657_high_1
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_high_1
NF4657_high_1
[»] chr5 (8 HSPs)
chr5 (18-545)||(32556959-32557486)
chr5 (410-528)||(32710645-32710763)
chr5 (415-545)||(25477797-25477927)
chr5 (428-531)||(32748164-32748267)
chr5 (407-530)||(32768398-32768521)
chr5 (184-366)||(32744266-32744449)
chr5 (405-540)||(32763385-32763523)
chr5 (428-526)||(32749686-32749784)
[»] chr1 (2 HSPs)
chr1 (406-540)||(17583881-17584015)
chr1 (405-540)||(17592686-17592821)
[»] chr7 (2 HSPs)
chr7 (418-504)||(7969384-7969470)
chr7 (424-545)||(37577593-37577714)
[»] scaffold0548 (1 HSPs)
scaffold0548 (319-366)||(10614-10661)
[»] chr3 (1 HSPs)
chr3 (319-366)||(15102343-15102390)


Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 32556959 - 32557486
Alignment:
Q  18 actatacaacaaaggctagctaacaatctgtcttggctttcacctgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacannnnnnn 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||           
T  32556959 actatacaacaaaggctagctaacaatctgtattggctttcacccgagtaagcaaatttgtcacactcagagaatcccaaataatttgccacattttttt 32557058  T
Q  118 naaacataagggtggatttaaataacttcattcttttatacatcggggctgcaataagctacagttagactatactgcaggagtcattacatctatctat 217  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557059 taaacataagggtggatttaaataacttcattcttttatacattggggctgcaataagctacagttagactatactgcaggagtcattacatctatctat 32557158  T
Q  218 tatatcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaac 317  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557159 tatatcaaaataaactacaatttccgctaatgtatgtttcttcatttgcagaatatcatagcaagcaaaaagatcattagagagctcaagcaaaataaac 32557258  T
Q  318 aaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacatctaggggaggcggaggat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32557259 aaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaatgttttgtcttagcattgatgtctgatctacttctaggggaggcggaggat 32557358  T
Q  418 gaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactggg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557359 gaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactggg 32557458  T
Q  518 atcgtttccttgtcaagaatcttatcct 545  Q
    ||||||||||||||||||||||||||||    
T  32557459 atcgtttccttgtcaagaatcttatcct 32557486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 410 - 528
Target Start/End: Complemental strand, 32710763 - 32710645
Alignment:
Q  410 cggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggt 509  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||| || | |||| |||||  |||| ||||||| ||||||| ||| || |    
T  32710763 cggaggatgaggttgagggttgacttctcttggatgttgtaattggcaagggtctgacagtcagctagttccttactggcaaagatcagacattgctgat 32710664  T
Q  510 gcactgggatcgtttcctt 528  Q
     |||||||||  |||||||    
T  32710663 ccactgggattctttcctt 32710645  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 545
Target Start/End: Complemental strand, 25477927 - 25477797
Alignment:
Q  415 gatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcact 514  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| ||| |||| ||| |||||| |||||  || ||| ||||||||||| | || ||||    
T  25477927 gatgaggtggatggttgacttctcttggatgttgtaattggcaatggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcact 25477828  T
Q  515 gggatcgtttccttgtcaagaatcttatcct 545  Q
     ||  | |||||||||||| |||||| ||||    
T  25477827 tggtacttttccttgtcaaaaatcttctcct 25477797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 531
Target Start/End: Complemental strand, 32748267 - 32748164
Alignment:
Q  428 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcct 527  Q
    |||| |||||||||||||||||||  ||||||||| |||| ||  |||||| |||| |||| ||| | ||||||||||||||| || ||||||  |||||    
T  32748267 gttgacttctcttggatgttgtaactggcaagggtctggcggttctctagttgcttcttggaaaagaacagacgttgttggtggacagggatcccttcct 32748168  T
Q  528 tgtc 531  Q
    ||||    
T  32748167 tgtc 32748164  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 530
Target Start/End: Complemental strand, 32768521 - 32768398
Alignment:
Q  407 aggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgtt 506  Q
    ||||||| || || ||| ||| ||| |||||||||||||||| ||| ||||||||| | | |||||||| || || ||  |||||| |||| ||||||||    
T  32768521 aggcggatgacgacgtgcaggattgacttctcttggatgttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgtt 32768422  T
Q  507 ggtgcactgggatcgtttccttgt 530  Q
    |||| |||||||||  ||||||||    
T  32768421 ggtgtactgggatcccttccttgt 32768398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 366
Target Start/End: Complemental strand, 32744449 - 32744266
Alignment:
Q  184 agactatactgcaggagtcattacatctatctattatatcaaaataaactacaatttcagctaatgtatgtttcttcagttgcagaatatca-----tag 278  Q
    |||||| ||| || |||||||||||||||||||| | |   ||||| |||||| ||||||||||||| |||||||| | |||||||| | ||     |||    
T  32744449 agactagactacaagagtcattacatctatctataagag--aaatagactacagtttcagctaatgtgtgtttcttaa-ttgcagaaaaacaaacaatag 32744353  T
Q  279 caagcaaaaagatcattagagagctcaagcaaaataaacaaaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 366  Q
    | ||||||| |||||||  | |||||||  ||||||||  ||||| ||||| |||  ||||||||||||||| ||| |||||||||||    
T  32744352 ccagcaaaa-gatcattccaaagctcaataaaaataaaataaaaagaagcaaaagttaaatccttgaacatgggaagcaaaagtcaaa 32744266  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 540
Target Start/End: Complemental strand, 32763523 - 32763385
Alignment:
Q  405 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagctta---ttggcaaacatcagacg 501  Q
    ||||||||| || |||||||| |||||  ||||||||||||||||||| |||||||||| || |||| ||||   |||||   | | | |  ||||||||    
T  32763523 ggaggcggatgaggaggtggatggttgaattctcttggatgttgtaattggcaagggtaaggttgtcctctaactgcttaccgtcgtcgatgatcagacg 32763424  T
Q  502 ttgttggtgcactgggatcgtttccttgtcaagaatctt 540  Q
    ||| | ||||| |||||||  ||||||||||||||||||    
T  32763423 ttgctcgtgcattgggatcccttccttgtcaagaatctt 32763385  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 526
Target Start/End: Complemental strand, 32749784 - 32749686
Alignment:
Q  428 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcc 526  Q
    |||| ||||||||||||| |||||| ||||||| | ||||  || |||| |||||||  | |||| |  ||||| ||||||||||||||||||| ||||    
T  32749784 gttgacttctcttggatgctgtaattggcaaggatttggcgttcctctattagcttaccgtcaaagaatagacgctgttggtgcactgggatcgcttcc 32749686  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 540
Target Start/End: Complemental strand, 17584015 - 17583881
Alignment:
Q  406 gaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgt 505  Q
    ||||||||||  ||| || | ||||| |||||||||||||||||||| |||||||||  || |||| |||||| |||||  | |||| |||||||||||     
T  17584015 gaggcggaggcagagatgaatggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgc 17583916  T
Q  506 tggtgcactgggatcgtttccttgtcaagaatctt 540  Q
    ||||||||||  ||   ||||||||||||||||||    
T  17583915 tggtgcactgcaatatcttccttgtcaagaatctt 17583881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 405 - 540
Target Start/End: Complemental strand, 17592821 - 17592686
Alignment:
Q  405 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 504  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||| | |||||||  ||   |||||||||| ||||  | |||| |||| ||||||    
T  17592821 ggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccaaagatcaaacgttg 17592722  T
Q  505 ttggtgcactgggatcgtttccttgtcaagaatctt 540  Q
     |||||||| |||||  |||||||||||||||||||    
T  17592721 ctggtgcaccgggatattttccttgtcaagaatctt 17592686  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 504
Target Start/End: Original strand, 7969384 - 7969470
Alignment:
Q  418 gaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 504  Q
    |||||||||||||| | |||||||||||||| ||| ||||| |||  |||||||||||| | ||||| ||||||| |||||||||||    
T  7969384 gaggtggagggttgacctctcttggatgttgcaattggcaatggtcaggctgtcatctaattgcttactggcaaagatcagacgttg 7969470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 545
Target Start/End: Complemental strand, 37577714 - 37577593
Alignment:
Q  424 gagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtt 523  Q
    |||||||| |||||||||||||| ||||| |||||||||  |||| | |||||||  ||||  |||||| |||||||||||    |||| |||||||  |    
T  37577714 gagggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcatatgcattgggatccct 37577615  T
Q  524 tccttgtcaagaatcttatcct 545  Q
    || |||||||||||||| ||||    
T  37577614 tcattgtcaagaatcttctcct 37577593  T

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Target: scaffold0548 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 10661 - 10614
Alignment:
Q  319 aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 366  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||    
T  10661 aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa 10614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 15102343 - 15102390
Alignment:
Q  319 aaaaacaagcataagacaaatccttgaacatgagaaccaaaagtcaaa 366  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||    
T  15102343 aaaaaaaagcaaaagtcaaatccttgaacatgagaagcaaaagtcaaa 15102390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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