View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_high_12 (Length: 324)

Name: NF4657_high_12
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_high_12
NF4657_high_12
[»] chr2 (8 HSPs)
chr2 (19-256)||(4795104-4795349)
chr2 (251-323)||(2199978-2200051)
chr2 (247-284)||(34944416-34944453)
chr2 (251-284)||(6027618-6027651)
chr2 (251-284)||(11852189-11852222)
chr2 (251-283)||(1142997-1143029)
chr2 (244-284)||(2200244-2200284)
chr2 (244-284)||(44436825-44436865)
[»] chr5 (10 HSPs)
chr5 (251-323)||(14649188-14649257)
chr5 (251-323)||(21239099-21239171)
chr5 (248-319)||(23286443-23286514)
chr5 (246-284)||(19571943-19571981)
chr5 (251-284)||(22657768-22657801)
chr5 (251-284)||(27873349-27873382)
chr5 (251-284)||(40643094-40643127)
chr5 (244-284)||(4976294-4976334)
chr5 (244-284)||(9065172-9065212)
chr5 (251-283)||(40738410-40738442)
[»] chr4 (13 HSPs)
chr4 (245-323)||(13620819-13620897)
chr4 (242-323)||(26866828-26866909)
chr4 (248-284)||(55014972-55015008)
chr4 (251-284)||(3085445-3085478)
chr4 (251-284)||(26889903-26889936)
chr4 (251-284)||(28298375-28298408)
chr4 (251-284)||(36901114-36901147)
chr4 (251-284)||(39114891-39114924)
chr4 (244-284)||(17610024-17610064)
chr4 (248-284)||(28495377-28495413)
chr4 (248-284)||(53564360-53564396)
chr4 (240-276)||(54878027-54878063)
chr4 (248-284)||(55563131-55563167)
[»] chr3 (18 HSPs)
chr3 (246-320)||(27646274-27646348)
chr3 (251-320)||(1111616-1111685)
chr3 (251-323)||(16776852-16776924)
chr3 (248-284)||(33212394-33212430)
chr3 (242-285)||(11354542-11354585)
chr3 (242-284)||(34811306-34811348)
chr3 (243-284)||(2993251-2993292)
chr3 (251-284)||(6784727-6784760)
chr3 (251-284)||(21458982-21459015)
chr3 (251-284)||(24813602-24813635)
chr3 (251-284)||(28673298-28673331)
chr3 (251-320)||(31541027-31541096)
chr3 (251-284)||(50517526-50517559)
chr3 (251-284)||(53164163-53164196)
chr3 (251-284)||(54866537-54866570)
chr3 (257-285)||(39952534-39952562)
chr3 (251-283)||(42044257-42044289)
chr3 (244-284)||(53687001-53687041)
[»] scaffold0236 (1 HSPs)
scaffold0236 (251-284)||(17464-17497)
[»] scaffold0161 (1 HSPs)
scaffold0161 (246-323)||(3433-3509)
[»] scaffold0250 (1 HSPs)
scaffold0250 (251-315)||(9399-9463)
[»] chr7 (10 HSPs)
chr7 (244-320)||(17317435-17317510)
chr7 (250-284)||(19845673-19845707)
chr7 (251-284)||(7400129-7400162)
chr7 (251-284)||(9140537-9140570)
chr7 (251-284)||(19292839-19292872)
chr7 (251-284)||(21119557-21119590)
chr7 (251-284)||(22991748-22991781)
chr7 (251-284)||(27529229-27529262)
chr7 (251-284)||(29629716-29629749)
chr7 (251-284)||(41444467-41444500)
[»] chr1 (5 HSPs)
chr1 (243-323)||(21631072-21631152)
chr1 (254-284)||(51467476-51467506)
chr1 (251-284)||(3934606-3934639)
chr1 (251-284)||(22567066-22567099)
chr1 (248-284)||(25284071-25284107)
[»] scaffold0674 (1 HSPs)
scaffold0674 (241-284)||(5141-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (241-284)||(10186-10229)
[»] scaffold0240 (1 HSPs)
scaffold0240 (241-284)||(18487-18530)
[»] chr8 (4 HSPs)
chr8 (251-284)||(4778591-4778624)
chr8 (251-284)||(41898500-41898533)
chr8 (248-284)||(44502617-44502653)
chr8 (248-284)||(45283796-45283832)
[»] chr6 (2 HSPs)
chr6 (251-284)||(9341838-9341871)
chr6 (294-323)||(23604505-23604534)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 4795349 - 4795104
Alignment:
Q  19 aactacaacgcgcgtaaatcaaaggggatgatgctgccatatagcaaaggaacgaaaactttccaaataattgtatctatttgctttcaattttaaacta 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795349 aactacaacgcgcgtaaataaaaggggatgatgctgccatatagcaaaggaacgaaaactttccaaataattgtatctatttgctttcaattttaaacta 4795250  T
Q  119 agttccagtggttgttgtgtcat-----aacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattt---tgagccagatgagctgggatg 210  Q
    |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  4795249 agttccagtggttgttgtgtcataacataacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattttgatgagccagatgagctgggatg 4795150  T
Q  211 gctagtgccaaccaatcagttcacgacacataatatttattactat 256  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4795149 gctagtgccaaccaatcagttcacgacacctaatatttattactat 4795104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 2199978 - 2200051
Alignment:
Q  251 tactatctccgtccctaattataagatcctttt-gtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    ||||| |||||||||||||||||||| |||||| ||        ||||||||||||||||||||||||||||||    
T  2199978 tactacctccgtccctaattataagaccctttttgtgaattttttttgtctctttttataagacccctttgcta 2200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 34944453 - 34944416
Alignment:
Q  247 ttattactatctccgtccctaattataagatccttttg 284  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34944453 ttattactatctccgtccctaattataagatccctttg 34944416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 6027618 - 6027651
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  6027618 tactacctccgtccctaattataagatccttttg 6027651  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 11852222 - 11852189
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  11852222 tactacctccgtccctaattataagatccttttg 11852189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 1142997 - 1143029
Alignment:
Q  251 tactatctccgtccctaattataagatcctttt 283  Q
    ||||| |||||||||||||||||||||||||||    
T  1142997 tactacctccgtccctaattataagatcctttt 1143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 2200284 - 2200244
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  2200284 tatttactactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 44436865 - 44436825
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||| ||||||||||||| |||||| |||||||    
T  44436865 tatttattactacctccgtccctaatgataagacccttttg 44436825  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 14649188 - 14649257
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    ||||| |||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||    
T  14649188 tactacctccgtccctaattataagatccttttgt---gattttttttctctttttataagacccctttgcta 14649257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 21239099 - 21239171
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    ||||| ||||||||||||||| |||| |||||||         ||||||||||||||||||||||||||||||    
T  21239099 tactacctccgtccctaattagaagacccttttgagaattttttttgtctctttttataagacccctttgcta 21239171  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 23286514 - 23286443
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccccttt 319  Q
    |||||||| |||||||||||||||||||| |||||||         |||||| |||||||||||||||||||    
T  23286514 tattactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccccttt 23286443  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 19571981 - 19571943
Alignment:
Q  246 tttattactatctccgtccctaattataagatccttttg 284  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  19571981 tttattactacctccgtccctaattataagacccttttg 19571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 22657768 - 22657801
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  22657768 tactacctccgtccctaattataagatccttttg 22657801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 27873382 - 27873349
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||||||||||||| |||||||    
T  27873382 tactatctccgtccctaattataagacccttttg 27873349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 40643094 - 40643127
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  40643094 tactacctccgtccctaattataagatccttttg 40643127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 4976334 - 4976294
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  4976334 tatttagtactacctccgtccctaattataagacccttttg 4976294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 9065212 - 9065172
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  9065212 tatttagtactatctccgtccctaattataaggcccttttg 9065172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 40738410 - 40738442
Alignment:
Q  251 tactatctccgtccctaattataagatcctttt 283  Q
    ||||| |||||||||||||||||||||||||||    
T  40738410 tactacctccgtccctaattataagatcctttt 40738442  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 13620897 - 13620819
Alignment:
Q  245 atttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    |||| |||||| ||||||||||||||||||||||||||||          ||||| |||||||||||||||||||||||    
T  13620897 atttgttactacctccgtccctaattataagatccttttgaaaaaaaaaattgtccctttttataagacccctttgcta 13620819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 26866909 - 26866828
Alignment:
Q  242 aatatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    ||||| || ||||| |||||||| ||||||||||| |||||||         ||||||||||||||||||||||||||||||    
T  26866909 aatatatagtactacctccgtccttaattataagacccttttgagaattttttttgtctctttttataagacccctttgcta 26866828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 55015008 - 55014972
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    ||||||||||||||||| |||||||||||||||||||    
T  55015008 tattactatctccgtccataattataagatccttttg 55014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 3085445 - 3085478
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  3085445 tactacctccgtccctaattataagatccttttg 3085478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 26889936 - 26889903
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  26889936 tactacctccgtccctaattataagatccttttg 26889903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 28298408 - 28298375
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  28298408 tactacctccgtccctaattataagatccttttg 28298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 36901147 - 36901114
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  36901147 tactacctccgtccctaattataagatccttttg 36901114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 39114924 - 39114891
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  39114924 tactacctccgtccctaattataagatccttttg 39114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 17610064 - 17610024
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  17610064 tatttaatactccctccgtccctaattataagatccttttg 17610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 28495377 - 28495413
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28495377 tattactacctctgtccctaattataagatccttttg 28495413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 53564396 - 53564360
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| |||||||||||||||||||| |||||||    
T  53564396 tattactacctccgtccctaattataagacccttttg 53564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 54878063 - 54878027
Alignment:
Q  240 ataatatttattactatctccgtccctaattataaga 276  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  54878063 ataatattaattactacctccgtccctaattataaga 54878027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 55563167 - 55563131
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| |||||||||||||||||||| |||||||    
T  55563167 tattactacctccgtccctaattataagacccttttg 55563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 27646348 - 27646274
Alignment:
Q  246 tttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 320  Q
    |||| ||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||| ||||    
T  27646348 tttactactacctccgtccctaattataagatccttttgagaaatttttttgtctctttttataagacccttttg 27646274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 1111685 - 1111616
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 320  Q
    |||||||||||||||||||||||||| |||||||         |||||||||||||||||||||| ||||    
T  1111685 tactatctccgtccctaattataagacccttttgagaaatttttttgtctctttttataagacccttttg 1111616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 16776924 - 16776852
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    ||||| ||||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||    
T  16776924 tactacctccgtccctaattataggatccttttgagaaaaaaaattgtctctttttataagacccctttgcta 16776852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 33212394 - 33212430
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33212394 tattactacctccgtccctaattataagatccttttg 33212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 11354542 - 11354585
Alignment:
Q  242 aatatttattactatctccgtccctaattataagatccttttgt 285  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||    
T  11354542 aatatatattactaactccgtcccaaattataagatccttttgt 11354585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 34811306 - 34811348
Alignment:
Q  242 aatatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| || || ||||||||||||||||||||||||||||    
T  34811306 aatatttaatattacctccgtccctaattataagatccttttg 34811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 2993251 - 2993292
Alignment:
Q  243 atatttattactatctccgtccctaattataagatccttttg 284  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  2993251 atatttaatactacctccgtccctaattataagatcattttg 2993292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 6784760 - 6784727
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||||||||||||| |||||||    
T  6784760 tactatctccgtccctaattataagacccttttg 6784727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 21458982 - 21459015
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  21458982 tactacctccgtccctaattataagatccttttg 21459015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 24813602 - 24813635
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  24813602 tactacctccgtccctaattataagatccttttg 24813635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 28673331 - 28673298
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  28673331 tactacctccgtccctaattataagatccttttg 28673298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 31541027 - 31541096
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 320  Q
    |||||||||||||||||||||||||||| ||||          |||||| ||||||||||||||||||||    
T  31541027 tactatctccgtccctaattataagatcattttaaaaaaataatttgtccctttttataagacccctttg 31541096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 50517559 - 50517526
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  50517559 tactacctccgtccctaattataagatccttttg 50517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 53164163 - 53164196
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  53164163 tactacctccgtccctaattataagatccttttg 53164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 54866570 - 54866537
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  54866570 tactacctccgtccctaattataagatccttttg 54866537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 39952562 - 39952534
Alignment:
Q  257 ctccgtccctaattataagatccttttgt 285  Q
    |||||||||||||||||||||||||||||    
T  39952562 ctccgtccctaattataagatccttttgt 39952534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 42044289 - 42044257
Alignment:
Q  251 tactatctccgtccctaattataagatcctttt 283  Q
    ||||| |||||||||||||||||||||||||||    
T  42044289 tactacctccgtccctaattataagatcctttt 42044257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 53687041 - 53687001
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  53687041 tatttattactatctctgtccataattataagacccttttg 53687001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 17464 - 17497
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||||||||||||||||||||||||||||||||    
T  17464 tactatctccgtccctaattataagatccttttg 17497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 3433 - 3509
Alignment:
Q  246 tttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    |||||||||| |||||||||||||||||||| |||||||         |||||| |||||||||||||||||||||||    
T  3433 tttattactacctccgtccctaattataagacccttttg-agaatttttttgtccctttttataagacccctttgcta 3509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 9463 - 9399
Alignment:
Q  251 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccc 315  Q
    ||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  9463 tactacctccgtccctaattataagatccttttgagaattttttttgtctctttttataagaccc 9399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 17317435 - 17317510
Alignment:
Q  244 tatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 320  Q
    |||||||||||  ||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||    
T  17317435 tatttattactc-ctccgtccctaattataagatccttttgagaattttttttgtccctttttataagacccctttg 17317510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 19845707 - 19845673
Alignment:
Q  250 ttactatctccgtccctaattataagatccttttg 284  Q
    |||||| ||||||||||||||||||||||||||||    
T  19845707 ttactacctccgtccctaattataagatccttttg 19845673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 7400129 - 7400162
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  7400129 tactacctccgtccctaattataagatccttttg 7400162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 9140570 - 9140537
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||||||||||||| |||||||    
T  9140570 tactatctccgtccctaattataagacccttttg 9140537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 19292839 - 19292872
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  19292839 tactacctccgtccctaattataagatccttttg 19292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 21119557 - 21119590
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  21119557 tactacctccgtccctaattataagatccttttg 21119590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 22991781 - 22991748
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  22991781 tactacctccgtccctaattataagatccttttg 22991748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 27529229 - 27529262
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  27529229 tactacctccgtccctaattataagatccttttg 27529262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 29629716 - 29629749
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||||||||||||| |||||||    
T  29629716 tactatctccgtccctaattataagaaccttttg 29629749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 41444500 - 41444467
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  41444500 tactacctccgtccctaattataagatccttttg 41444467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 21631152 - 21631072
Alignment:
Q  243 atatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgcta 323  Q
    |||| |||||||| |||||||||||||||||||| |||||||          ||||| |||||||||||||||||||||||    
T  21631152 atatatattactacctccgtccctaattataagacccttttgaagaaacaaattgtccctttttataagacccctttgcta 21631072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 51467506 - 51467476
Alignment:
Q  254 tatctccgtccctaattataagatccttttg 284  Q
    |||||||||||||||||||||||||||||||    
T  51467506 tatctccgtccctaattataagatccttttg 51467476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 3934606 - 3934639
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  3934606 tactacctccgtccctaattataagatccttttg 3934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 22567066 - 22567099
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  22567066 tactacctccgtccctaattataagatccttttg 22567099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 25284107 - 25284071
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25284107 tattactacctccgtccctaattataggatccttttg 25284071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 5141 - 5184
Alignment:
Q  241 taatatttattactatctccgtccctaattataagatccttttg 284  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  5141 taatgtttattactacctccgtccctaattataagacccttttg 5184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 10229 - 10186
Alignment:
Q  241 taatatttattactatctccgtccctaattataagatccttttg 284  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  10229 taatgtttattactacctccgtccctaattataagacccttttg 10186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 18487 - 18530
Alignment:
Q  241 taatatttattactatctccgtccctaattataagatccttttg 284  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  18487 taatgtttattactacctccgtccctaattataagacccttttg 18530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 4778591 - 4778624
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||||||||||| ||||||||||||||||||||    
T  4778591 tactatctccgtctctaattataagatccttttg 4778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 41898533 - 41898500
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  41898533 tactacctccgtccctaattataagatccttttg 41898500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 44502617 - 44502653
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44502617 tattactccctccgtccctaattataagatccttttg 44502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 45283832 - 45283796
Alignment:
Q  248 tattactatctccgtccctaattataagatccttttg 284  Q
    |||||||| |||||||||||||||||||| |||||||    
T  45283832 tattactacctccgtccctaattataagacccttttg 45283796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 9341838 - 9341871
Alignment:
Q  251 tactatctccgtccctaattataagatccttttg 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  9341838 tactacctccgtccctaattataagatccttttg 9341871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 23604505 - 23604534
Alignment:
Q  294 tttgtctctttttataagacccctttgcta 323  Q
    ||||||||||||||||||||||||||||||    
T  23604505 tttgtctctttttataagacccctttgcta 23604534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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