View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_high_14 (Length: 319)
Name: NF4657_high_14
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 42433757 - 42434057
Alignment:
| Q |
1 |
agcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccaaaagaacaaaccaccgccgaaccagccaaaacataacaagaggtgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42433757 |
agcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccagaagaacaaaccaccgccgaaccagccaaaacataacaagaggtgac |
42433856 |
T |
|
| Q |
101 |
agcgctgccacccacctcaccaccgcagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42433857 |
agcgctgccacccacctcaccaccgcagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaac |
42433956 |
T |
|
| Q |
201 |
gcagaggagacgagctgaaaaaccttgaaccagccagccaaggaatctacgcgacccacctacccaaagaacggaactggaacaaaccgcatcaaccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42433957 |
gcagaggagacgagctgaaaaaccttgaaccagccagccaaggaatccacgcgacccacctacccaaagaacggaactagaacaaaccgcatcaaccaaa |
42434056 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
42434057 |
g |
42434057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17302908 - 17302798
Alignment:
| Q |
1 |
agcaaacaatacgaacaagcaaaaatacgatacgaacaaacaaatagtaaccaaaagaacaaaccaccgccgaaccagccaaaacataacaagaggtgac |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17302908 |
agcaaacaatacgaacaagcgaaaatacgatagcaacaaacaaatagtaaccaaaagaacaaaccacctccgaaccagccaaaacataacaagaggtgac |
17302809 |
T |
|
| Q |
101 |
agcgctgccac |
111 |
Q |
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|||| |||||| |
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| T |
17302808 |
agcggtgccac |
17302798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 17302809 - 17302712
Alignment:
| Q |
126 |
cagcggtgccacgaacacagccagtagtccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaacgcagaggagacgagctgaaaaac |
223 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17302809 |
cagcggtgccacaaacacagccagtaacccaaccaaacaaaagaaagcacaaaaacacaatccaacctttccaacgcagaggagacgagctgaaaaac |
17302712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 22065454 - 22065380
Alignment:
| Q |
61 |
aaaccaccgccgaaccagccaaaacataacaagaggtgacagcgctgccacccacctcaccaccgcagcggtgcca |
136 |
Q |
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||||| ||| ||| |||||||||||| ||||||||| ||| |||||||| ||| |||||||||||||||| |||| |
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| T |
22065454 |
aaacctccgacgagccagccaaaacagaacaagaggagacgacgctgcca-ccagctcaccaccgcagcggcgcca |
22065380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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