View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_high_16 (Length: 300)
Name: NF4657_high_16
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3947465 - 3947184
Alignment:
| Q |
1 |
aacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgttttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaacctgaaa |
100 |
Q |
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| T |
3947465 |
aacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgttttt-gacactgtttccaaaactggaaagaaaactgaattctgggtagaacctgaaa |
3947367 |
T |
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| Q |
101 |
acaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactattgaccctgttgagcctgataacaaaccttctgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3947366 |
acaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactattgaccctgttgagcctgataacaaaccttctgaaac |
3947267 |
T |
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| Q |
201 |
tgccacagctgtctctattgagcctgagaacaaaccttctgaaactgtcactgttgctgcctaagactcatttggttctgttt |
283 |
Q |
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| T |
3947266 |
tgccacagttgtctctattgagcctgagaacaaaccttctgaaactgccactgttgctgcctaagactcatgtggttctgttt |
3947184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 3940579 - 3940506
Alignment:
| Q |
209 |
ctgtctctattgagcctgagaacaaaccttctgaaactgtcactgttgctgcctaagactcatttggttctgttt |
283 |
Q |
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|||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
3940579 |
ctgtctctattgagactgaga-caaaccttctgaaactgcccctgttgctgcctaagactcacgtggttctgttt |
3940506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18602726 - 18602683
Alignment:
| Q |
1 |
aacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtt |
44 |
Q |
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||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
18602726 |
aacaaaaggtgactgttaaaggaaatgtaaacccacaagatgtt |
18602683 |
T |
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