View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_high_24 (Length: 246)
Name: NF4657_high_24
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_high_24 |
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| [»] scaffold0464 (1 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 19637965 - 19638183
Alignment:
| Q |
17 |
aaaaagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttg |
116 |
Q |
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| T |
19637965 |
aaaaagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttg |
19638064 |
T |
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| Q |
117 |
aaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcgaaattctagttccattgaaggtacgcc |
216 |
Q |
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| T |
19638065 |
aaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcgtcagggaggaacacgcgcgaaattctagttccactgaaggtacgcc |
19638164 |
T |
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| Q |
217 |
gcaacttaggttgatgatg |
235 |
Q |
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| T |
19638165 |
gcaacttaggttgatgatg |
19638183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 19598521 - 19598691
Alignment:
| Q |
20 |
aagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaa |
119 |
Q |
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| T |
19598521 |
aagtgcaatgtgtttgtttcttgcagattgcttgaggtgtagtttgacaaaagtgggatgagagattagggttttccatgacttgcagacgcatttgaat |
19598620 |
T |
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| Q |
120 |
cgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcga |
190 |
Q |
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| T |
19598621 |
tgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatcagggaggaatacgagcga |
19598691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 15572746 - 15572850
Alignment:
| Q |
76 |
gatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagg |
175 |
Q |
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| T |
15572746 |
gatcagagaataaggttttccaggacctgcagacgcacttcatccgcatcagatatttcacttcaaggaacgataggacttccacaataagttcatcagg |
15572845 |
T |
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| Q |
176 |
gagga |
180 |
Q |
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||||| |
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| T |
15572846 |
gagga |
15572850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 19610199 - 19610308
Alignment:
| Q |
69 |
aaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagtt |
168 |
Q |
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| T |
19610199 |
aaagtgggatcggatatgagagctttccatgacttgcagacgcacttaaatcgcatcagagatttcaccgggagaaatgacaggacttcggtgattaact |
19610298 |
T |
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| Q |
169 |
catcagggag |
178 |
Q |
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| T |
19610299 |
cattagggag |
19610308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 29598353 - 29598450
Alignment:
| Q |
89 |
ggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgc |
186 |
Q |
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| T |
29598353 |
ggttttccatgacttgcacacacaccttagtcgcatcagagattgcacaggaaggaatgaaaggacttctgcgatgagttcatcagggaggaatacgc |
29598450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 7261 - 7213
Alignment:
| Q |
80 |
agagatgatggttttccatgacttgcagacacatttgaaacgcatcaga |
128 |
Q |
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| T |
7261 |
agagattagggttttccatgatttgcagacacatttgaattgcatcaga |
7213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 14559 - 14623
Alignment:
| Q |
54 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
118 |
Q |
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| T |
14559 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
14623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 23394 - 23458
Alignment:
| Q |
54 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
118 |
Q |
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| T |
23394 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
23458 |
T |
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