View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_high_25 (Length: 245)
Name: NF4657_high_25
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_high_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 41425573 - 41425445
Alignment:
| Q |
78 |
taagagtcctttgccaagtagcgaccctagagatacaagttaggatacatgtaaaaactctaacgatcgacttaatataagagtaagagtgagaagtata |
177 |
Q |
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| T |
41425573 |
taagagtcctttgccaagtagcgaccctagagatacaagttaggatacatgtaaaaactctaacgatcgacttaatataagagtaagagtgagaag---- |
41425478 |
T |
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| Q |
178 |
tattgaaaggttagatattgcatccattgtgtt |
210 |
Q |
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| T |
41425477 |
tattgaaaggttagatgttgcatcccttgtgtt |
41425445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 41427188 - 41427145
Alignment:
| Q |
38 |
tagaaaaacttgacatataataaaattaaaaggaacaatataag |
81 |
Q |
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| T |
41427188 |
tagaaaaacttgacatataataaaattaaaaggaatagtataag |
41427145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 23069860 - 23069888
Alignment:
| Q |
216 |
ttcgaaccccataccttgcatatattatg |
244 |
Q |
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| T |
23069860 |
ttcgaaccccataccttgcatatattatg |
23069888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 7839119 - 7839150
Alignment:
| Q |
214 |
gattcgaaccccataccttgcatatattatgc |
245 |
Q |
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| T |
7839119 |
gattcgaaccccataccttgcatatattatgc |
7839150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 29808271 - 29808300
Alignment:
| Q |
216 |
ttcgaaccccataccttgcatatattatgc |
245 |
Q |
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| T |
29808271 |
ttcgaaccccataccttgcatatattatgc |
29808300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 12698658 - 12698626
Alignment:
| Q |
213 |
agattcgaaccccataccttgcatatattatgc |
245 |
Q |
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| T |
12698658 |
agattcgaaccccagaccttgcatatattatgc |
12698626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 21914074 - 21914103
Alignment:
| Q |
216 |
ttcgaaccccataccttgcatatattatgc |
245 |
Q |
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| T |
21914074 |
ttcgaaccccataccttgcatatattatgc |
21914103 |
T |
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