View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4657_high_27 (Length: 242)

Name: NF4657_high_27
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4657_high_27
NF4657_high_27
[»] chr3 (4 HSPs)
chr3 (1-204)||(42433566-42433763)
chr3 (60-204)||(557386-557526)
chr3 (1-49)||(557316-557364)
chr3 (136-184)||(9192482-9192530)
[»] chr2 (2 HSPs)
chr2 (67-232)||(17303340-17303504)
chr2 (10-58)||(17302909-17302957)
[»] chr4 (1 HSPs)
chr4 (1-204)||(22065527-22065738)
[»] chr7 (1 HSPs)
chr7 (68-199)||(47810628-47810754)
[»] chr5 (1 HSPs)
chr5 (156-204)||(3925438-3925486)
[»] chr6 (1 HSPs)
chr6 (160-204)||(31750137-31750181)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 42433763 - 42433566
Alignment:
Q  1 gtttgcttctgtgtttcatatcagagacttcgagtggtggtagttatggactttttgttccgaaagggtgtggttcttttaatcccgaaagggttgttag 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||     | ||||| |  ||| |||||||||||||||||    
T  42433763 gtttgcttctgtgtttcatataagagacttcgggtggtggtagttatggactttttgtggtga-----tttggtt-tcataaacccgaaagggttgttag 42433670  T
Q  101 ggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttgagatttgcaggcctcaagtcttcaaggttacctc 200  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42433669 gattctttgcaatcggttgagttggtgttcttgtgtgtttgactccctgaagtttcaggtctgttgagatctgcaggcctcaagtcttcaaggttacctc 42433570  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 557386 - 557526
Alignment:
Q  60 ccgaaagggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcagg 159  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| ||  ||| |   |||| ||| ||| |||| ||| ||||    
T  557386 ccgaaagggtttggttcttttaa-ctcgaaagggttgttcgggttctttgcaatcggttgattt--tgtactcttgtgcttg-ctctctgatgttccagg 557481  T
Q  160 tctgttgagatttgcaggcctcaagtcttcaaggttacctcctct 204  Q
    ||||||||||| ||||||| ||||||||||| |||||| ||||||    
T  557482 tctgttgagatctgcaggcttcaagtcttcagggttacgtcctct 557526  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 557316 - 557364
Alignment:
Q  1 gtttgcttctgtgtttcatatcagagacttcgagtggtggtagttatgg 49  Q
    |||||||||||||||| | ||||||||||||  |||||||| |||||||    
T  557316 gtttgcttctgtgttttagatcagagacttcaggtggtggttgttatgg 557364  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 9192530 - 9192482
Alignment:
Q  136 tgtttgactccctgaagtttcaggtctgttgagatttgcaggcctcaag 184  Q
    ||||||| || |||| ||| |||||||||||||||||||||| ||||||    
T  9192530 tgtttgattctctgatgttccaggtctgttgagatttgcaggtctcaag 9192482  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 17303340 - 17303504
Alignment:
Q  67 ggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttg 166  Q
    |||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||| |||||||||||    
T  17303340 ggtgtggtccttttaa-cccaaaagagttgttagggttctttgcaatcggttgagttgatgttcatgtgtgcttgaaacc-tgaagttccaggtctgttg 17303437  T
Q  167 agatttgcaggcctcaagtcttcaaggttacctcctctttggttct-acctcttattcatctcagtc 232  Q
    |||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  17303438 agatctgcaggcttcaagtcttcaaggttaccttctctctggttctgacctcttatccatctcagtc 17303504  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 17302909 - 17302957
Alignment:
Q  10 tgtgtttcatatcagagacttcgagtggtggtagttatggactttttgt 58  Q
    ||||||||| ||||||||||| |  ||||||||||||||| ||||||||    
T  17302909 tgtgtttcagatcagagactttggatggtggtagttatggcctttttgt 17302957  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22065527 - 22065738
Alignment:
Q  1 gtttgcttctgtgtttcatatcagagacttcgagtggtggtagttatggacttttt---gtt--------ccgaaagggtgtggttcttttaatcccgaa 89  Q
    |||||||| ||||||||| ||||||||||||| |||||||| ||||||| ||| ||   |||        |||||||||| |||||||||||| ||||||    
T  22065527 gtttgcttatgtgtttcagatcagagacttcgggtggtggttgttatggccttgttttggtttcgtaaacccgaaagggtttggttcttttaa-cccgaa 22065625  T
Q  90 agggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttgagatttgcaggcctcaagtcttc 189  Q
    ||||||||| ||||||||||||||| ||||| || ||| || ||||   ||||||| |||| ||| ||||||||||||||| ||||||| ||||||||||    
T  22065626 agggttgtttgggttctttgcaatccgttgattttgtgctcttgtgc--ttgactctctgatgttccaggtctgttgagatctgcaggcttcaagtcttc 22065723  T
Q  190 aaggttacctcctct 204  Q
    | | |||| ||||||    
T  22065724 aggattacgtcctct 22065738  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 47810754 - 47810628
Alignment:
Q  68 gtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttga 167  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||| |||||||   ||||||| |  | ||| ||||||||||||    
T  47810754 gtgtggttcttttaa-cccgaaagggttgtttgggttctttgaaatcggttgaattggtgctcatgtgc--ttgactctc--atgttccaggtctgttga 47810660  T
Q  168 gatttgcaggcctcaagtcttcaaggttacct 199  Q
    ||| ||||||||||||||||||| ||||||||    
T  47810659 gatctgcaggcctcaagtcttcagggttacct 47810628  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 3925438 - 3925486
Alignment:
Q  156 caggtctgttgagatttgcaggcctcaagtcttcaaggttacctcctct 204  Q
    ||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  3925438 caggtctgttgagatctgcaggtctcaagtcttcagggtcacctcctct 3925486  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 31750137 - 31750181
Alignment:
Q  160 tctgttgagatttgcaggcctcaagtcttcaaggttacctcctct 204  Q
    ||||||||||| |||||| |||||||||||| ||| |||||||||    
T  31750137 tctgttgagatctgcaggtctcaagtcttcagggtcacctcctct 31750181  T

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