View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4657_high_33 (Length: 230)
Name: NF4657_high_33
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 36164102 - 36164300
Alignment:
| Q |
17 |
atatataactcatttttgtggctcaaccactagcagtttggccctatgatcacaaattacttagcttggtaaaagaacattgctgaattgccttggatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36164102 |
atatataactcatttttgtggctcaaccactagcaggttggccctatgatcacaaattacttagcttggtaaaagaacattgctgaatttccttggatta |
36164201 |
T |
|
| Q |
117 |
gtttaattagaatttagaactactaatcctaaaggtttagcctttagcaacgtggtcacattacataaaataagaatctgtgactaacgcagaataatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36164202 |
gtttaattagaatttagaactactaatcctaaaggtttagcctttagcaacgtggtcacattacataaaataagaatctgtgactagcgcagaataatg |
36164300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University