View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4657_low_10 (Length: 388)
Name: NF4657_low_10
Description: NF4657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4657_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 8348144 - 8347803
Alignment:
| Q |
11 |
atgagatgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacaca |
110 |
Q |
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| T |
8348144 |
atgaaatgaactagttttctattgacaaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaccaaaacaca |
8348045 |
T |
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| Q |
111 |
atcaaactttattacaagaaagttttaacaaaatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacac |
210 |
Q |
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| T |
8348044 |
atcaaactttattacaagaaagttttaacaaaatgtaattcattttatttcgtacacacccagaataggcattcatcctacccataaccaaacggcacac |
8347945 |
T |
|
| Q |
211 |
tgctaaccaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaattacttttagttctt |
310 |
Q |
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| T |
8347944 |
tgataaccaaactacattattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctgcaaaaacaaaaattacttttagttctt |
8347845 |
T |
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| Q |
311 |
ggaaacaacatcaaagcattgcaatttccagggaataaattg |
352 |
Q |
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| T |
8347844 |
ggaaacaacatcaaagcattgccatttccagggaataaattg |
8347803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 349
Target Start/End: Complemental strand, 26730418 - 26730273
Alignment:
| Q |
206 |
cacactgctaaccaaactacattattcaaaaacagcaaaaga-tgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaa-ttactttt |
303 |
Q |
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| T |
26730418 |
cacagtgctaatcaatctacattattctacaacagcaaaaaaatgcaatcatcccatacagaacgaataagagatcctgcaaaagtaaaaaattaaattt |
26730319 |
T |
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| Q |
304 |
agttcttggaaacaacatcaaagcattgcaatttccagggaataaa |
349 |
Q |
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| T |
26730318 |
agtacttggaaataacatcaaagcagtgcaatttccatggaataaa |
26730273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 35901510 - 35901177
Alignment:
| Q |
14 |
agatgaactagttttctattgac-aaaaagccagatagcatataaaagattacattttcataccaaaactaccaaacatgaaagcttaacaaaacacaat |
112 |
Q |
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|||||||||||||||||| || | ||||| | |||||||||||| |||||||||| | ||| | |||||||||||||||||||||| |||||||||| |
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| T |
35901510 |
agatgaactagttttctactgtccaaaaaacttaatagcatataaacgattacatttccctacagatactaccaaacatgaaagcttaagaaaacacaat |
35901411 |
T |
|
| Q |
113 |
caaactttattacaagaaagttttaacaaaatgtaattcattttatttattacacacccagaataggcattcatcctacccataaccaaactgcacactg |
212 |
Q |
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| T |
35901410 |
taaactttatcaaaggaaagtttcaacaaaatgacattcattttatttggtacacaacaagaataggcattcatcctacccttatccaaacagcacac-- |
35901313 |
T |
|
| Q |
213 |
ctaaccaaactacattattcaaaaacagcaaaagatgtactcatcttgtacagtaccaataggagatcctgcaaaaacaaaaattacttttagttcttgg |
312 |
Q |
| |
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| | | |||||||||||| ||||||||||||||||||||| || || | ||||||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
35901312 |
--atcgacactacattattctaaaacagcaaaagatgtactcgtcccgttcggtaccaataggagatcctgtaaaa--aaaaattaattttagttcttgg |
35901217 |
T |
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| Q |
313 |
aaacaacatcaaagcattgcaatttccagggaataaattg |
352 |
Q |
| |
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|||||| |||||||||||||| |||||| || |||||||| |
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| T |
35901216 |
aaacaatatcaaagcattgcagtttccatggcataaattg |
35901177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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